Factsheet for Bra034230.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48578	Canola	cytosol	85.55	89.64
Bra034226.1-P	Field mustard	cytosol	73.76	67.36
Bra034229.1-P	Field mustard	cytosol	61.22	58.33
Bra030342.1-P	Field mustard	cytosol	49.05	55.36
Bra034231.1-P	Field mustard	cytosol, plastid	53.23	54.05
Bra034228.1-P	Field mustard	cytosol	59.7	52.86
Bra000817.1-P	Field mustard	plastid	35.36	51.67
Bra030690.1-P	Field mustard	cytosol	53.99	50.53
Bra000816.1-P	Field mustard	plastid	60.84	49.23
Bra034227.1-P	Field mustard	plastid	57.79	47.8
Bra031582.1-P	Field mustard	nucleus	62.36	46.86
Bra000723.1-P	Field mustard	cytosol	24.71	42.76
PGSC0003DMT400058969	Potato	cytosol	14.45	42.7
VIT_10s0003g04300.t01	Wine grape	cytosol	48.67	39.88
PGSC0003DMT400016134	Potato	cytosol	43.73	39.66
KRH21099	Soybean	cytosol	46.77	39.55
PGSC0003DMT400052833	Potato	cytosol	40.68	38.91
KRH11147	Soybean	cytosol	46.39	38.36
Solyc08g013800.2.1	Tomato	cytosol	41.83	37.41
PGSC0003DMT400015035	Potato	cytosol	42.21	36.27
Solyc08g006940.2.1	Tomato	cytosol	41.83	35.37
TraesCS3B01G443100.1	Wheat	cytosol	34.6	35.27
PGSC0003DMT400015030	Potato	cytosol	39.54	35.14
Solyc08g013780.1.1	Tomato	cytosol	16.35	34.96
PGSC0003DMT400090939	Potato	cytosol	39.54	34.32
TraesCS5B01G466500.1	Wheat	extracellular	13.69	34.29
PGSC0003DMT400054358	Potato	cytosol	44.11	34.22
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	34.22	33.71
TraesCS5D01G468200.1	Wheat	cytosol, plasma membrane, plastid	25.1	32.67
TraesCS5B01G081700.1	Wheat	cytosol	20.53	32.53
Zm00001d024252_P001	Maize	cytosol	32.32	32.2
TraesCS5B01G484300.1	Wheat	cytosol	24.71	32.02
TraesCS5D01G484300.1	Wheat	cytosol	24.71	32.02
TraesCS5A01G471800.1	Wheat	cytosol	24.33	31.53
TraesCS5D01G100900.1	Wheat	endoplasmic reticulum	20.53	31.4
TraesCS5B01G484500.1	Wheat	cytosol	24.33	31.22
TraesCS1D01G126200.1	Wheat	nucleus	34.22	30.93
Bra034194.1-P	Field mustard	cytosol	62.74	30.84
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	20.15	30.81
TraesCS1D01G034100.1	Wheat	cytosol	37.64	30.18
TraesCS4B01G183700.1	Wheat	cytosol	33.46	29.83
TraesCS1A01G033100.1	Wheat	cytosol	36.88	29.57
KXG24675	Sorghum	cytosol	32.32	29.51
TraesCS1B01G041200.1	Wheat	cytosol	36.88	29.39
Solyc08g013820.2.1	Tomato	cytosol	41.44	29.3
TraesCS1A01G128000.1	Wheat	cytosol	25.86	29.18
TraesCS4B01G183800.1	Wheat	cytosol	33.84	29.09
TraesCS5D01G088900.1	Wheat	cytosol	33.84	29.09
Bra020205.1-P	Field mustard	plastid	62.36	28.92
HORVU2Hr1G027710.1	Barley	cytosol	31.94	28.87
TraesCS2A01G153600.1	Wheat	cytosol, plastid	33.84	28.8
TraesCS5A01G075400.1	Wheat	cytosol	33.46	28.76
KXG24670	Sorghum	cytosol	34.6	28.71
HORVU1Hr1G004970.3	Barley	cytosol	35.36	28.7
TraesCS2B01G178700.1	Wheat	plastid	33.46	28.48
Zm00001d010914_P001	Maize	cytosol	35.36	28.44
TraesCS2A01G071400.1	Wheat	cytosol	11.41	28.3
TraesCS2D01G159000.1	Wheat	plastid	33.08	28.16
TraesCS5B01G484100.1	Wheat	cytosol	23.95	28.12
TraesCS3B01G443800.1	Wheat	nucleus	36.88	28.12
Os02t0317300-01	Rice	cytosol	34.98	28.05
TraesCS7A01G193100.1	Wheat	cytosol	32.7	27.92
TraesCS7B01G098400.1	Wheat	cytosol	32.7	27.92
Os08t0194350-00	Rice	cytosol	28.14	27.82
HORVU2Hr1G027770.2	Barley	mitochondrion	31.94	27.81
TraesCS3B01G444000.1	Wheat	nucleus	36.88	27.71
Zm00001d024265_P001	Maize	cytosol	31.56	27.67
EES14679	Sorghum	nucleus	36.12	27.62
Os02t0317500-01	Rice	cytosol	34.6	27.58
TraesCS7D01G194300.1	Wheat	cytosol	31.56	27.57
TraesCS3A01G410700.1	Wheat	mitochondrion	36.5	27.43
TraesCS5B01G484600.1	Wheat	cytosol	21.67	27.4
Os08t0193500-00	Rice	cytosol	22.81	27.4
TraesCS7D01G194400.1	Wheat	extracellular	32.7	27.22
EES17669	Sorghum	cytosol	34.22	27.11
HORVU0Hr1G019800.1	Barley	cytosol	31.94	27.1
TraesCS2A01G313400.1	Wheat	cytosol	31.94	27.01
TraesCS7B01G205200.1	Wheat	mitochondrion	35.36	26.88
TraesCS7D01G300400.1	Wheat	mitochondrion, nucleus	35.36	26.88
TraesCS3D01G405300.1	Wheat	nucleus	35.74	26.86
TraesCS7B01G287400.1	Wheat	cytosol	32.7	26.63
TraesCS2B01G332200.1	Wheat	cytosol	31.56	26.52
TraesCS2D01G311900.1	Wheat	cytosol	31.56	26.52
TraesCS7D01G381100.1	Wheat	mitochondrion	34.22	26.39
Os08t0195800-00	Rice	cytosol, mitochondrion, nucleus	34.6	26.3
TraesCS7A01G484100.1	Wheat	cytosol	9.89	26.26
HORVU5Hr1G020150.1	Barley	mitochondrion	33.84	26.25
TraesCS3A01G411000.1	Wheat	nucleus	33.84	26.25
TraesCS2D01G070200.1	Wheat	cytosol	31.94	25.93
TraesCS2B01G085400.1	Wheat	cytosol	30.8	25.31
TraesCS2B01G085200.1	Wheat	cytosol	31.18	25.31
Os08t0193200-00	Rice	cytosol	11.03	25.22
Os11t0637300-00	Rice	cytosol	11.41	25.0
TraesCS7B01G480000.1	Wheat	cytosol	30.42	24.92
OQU80176	Sorghum	mitochondrion	20.91	24.66
HORVU2Hr1G020470.1	Barley	mitochondrion	11.03	24.58
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	20.91	24.55
TraesCS6B01G067700.1	Wheat	plastid	24.71	24.25
Os08t0193900-01	Rice	nucleus	36.12	23.99
Zm00001d024764_P001	Maize	cytosol	32.32	23.81
TraesCS7D01G203600.1	Wheat	plastid	30.8	23.75
TraesCS7D01G555100.1	Wheat	cytosol	30.04	23.58
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	19.77	23.42
TraesCS3B01G452600.1	Wheat	extracellular	28.9	23.03
TraesCS2D01G011000.1	Wheat	cytosol	27.76	22.96
TraesCS6A01G090000.1	Wheat	mitochondrion	30.8	22.95
Os08t0193300-00	Rice	cytosol	28.9	22.82
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	16.73	22.8
HORVU2Hr1G020540.2	Barley	cytosol	24.33	22.78
TraesCS3D01G413100.1	Wheat	cytosol, endoplasmic reticulum, vacuole	30.04	22.7
TraesCS5D01G292400.1	Wheat	cytosol	29.66	22.67
TraesCS7D01G203500.1	Wheat	plastid	29.28	22.65
Zm00001d046526_P001	Maize	plastid	24.33	22.61
TraesCSU01G016500.1	Wheat	mitochondrion	30.42	22.6
TraesCS6B01G112100.1	Wheat	mitochondrion	30.04	22.57
OQU80048	Sorghum	cytosol	24.33	22.46
OQU80174	Sorghum	cytosol	11.41	22.39
TraesCS5B01G284300.1	Wheat	cytosol	29.28	22.38
HORVU6Hr1G014660.1	Barley	cytosol	17.87	22.07
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	28.52	21.99
Os08t0191300-00	Rice	cytosol, golgi	21.29	21.79
TraesCS6B01G310200.1	Wheat	plastid	29.66	21.61
TraesCS6B01G112000.1	Wheat	mitochondrion	28.14	21.45
HORVU2Hr1G077990.2	Barley	plastid	30.42	21.39
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	23.95	20.79
TraesCS2A01G119000.1	Wheat	nucleus	33.46	20.37
Os08t0195900-00	Rice	cytosol, mitochondrion, nucleus, plastid	22.81	19.87
TraesCS3D01G413000.1	Wheat	cytosol	33.08	19.86
TraesCS3B01G452400.1	Wheat	cytosol	33.46	19.78
TraesCS4D01G274100.1	Wheat	cytosol	10.65	19.72
HORVU6Hr1G070700.2	Barley	mitochondrion	29.28	19.44
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	18.25	19.2
EES14677	Sorghum	cytosol, mitochondrion, nucleus, plastid	34.22	19.15
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	17.49	18.93
TraesCS3D01G412900.1	Wheat	cytosol, plastid	33.46	18.8
TraesCS3B01G452300.1	Wheat	plastid	33.08	18.71
TraesCS3A01G417500.1	Wheat	cytosol	27.76	18.67
TraesCS3B01G452500.1	Wheat	cytosol	32.7	18.18
HORVU3Hr1G092720.1	Barley	cytosol, mitochondrion, nucleus	32.7	18.14
TraesCS6A01G051000.1	Wheat	plastid	25.1	17.74
TraesCS3A01G417400.1	Wheat	cytosol	33.08	17.54
TraesCSU01G016600.1	Wheat	mitochondrion	17.87	17.41
HORVU6Hr1G070690.2	Barley	extracellular, mitochondrion, plasma membrane	19.39	17.06
TraesCS5D01G484100.1	Wheat	cytosol	23.57	16.71
Os08t0196200-01	Rice	cytosol	11.03	10.58
Os08t0194000-00	Rice	cytosol, vacuole	0.76	0.53

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EnsemblPlantsGene:Bra034230	EnsemblPlants:Bra034230.1	EnsemblPlants:Bra034230.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4EZI7	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR44078
PANTHER:PTHR44078:SF5	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002543826
SEG:seg	:	:	:	:	:

Description

AT4G05460 (E=3e-071) | F-box family protein (FBL20)

Coordinates

chrA01:-:26826606..26827473

Molecular Weight (calculated)

30296.2 Da

IEP (calculated)

7.879

GRAVY (calculated)

-0.141

Length

263 amino acids

Sequence
(BLAST)

001: MKEGECINWA ELPYELMSSI LRRLSSIDIL ENAQRVCTSW RHVCKGPEMW RKIDMRNLVD VGYTLEIMCR HAVDRSQRGL VEINIWHFAT DSLLNHIAER
101: SSNLRSLRLV MCSRITNDGL AKALAKLPLL EELEFSYCPL SVESLRLSGR SCPNLKTLKL NRLRLMRFPY ESDDDALAIA ETMPKLSHLQ LFANSLTDAG
201: LNAILDNCPN LEHLDLRECR SVKLSGDLRK RCSERIKVLR EPFGCIMLSH VLELIYDMLH ISR

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.