Factsheet for TraesCS1A01G033100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G034100.1	Wheat	cytosol	96.04	96.04
TraesCS1B01G041200.1	Wheat	cytosol	94.21	93.64
HORVU1Hr1G004970.3	Barley	cytosol	89.63	90.74
Zm00001d010914_P001	Maize	cytosol	69.82	70.03
TraesCS2A01G071400.1	Wheat	cytosol	21.95	67.92
EES17669	Sorghum	cytosol	68.6	67.77
Zm00001d024764_P001	Maize	cytosol	53.66	49.3
TraesCS5A01G075400.1	Wheat	cytosol	41.16	44.12
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	35.67	43.82
PGSC0003DMT400058969	Potato	cytosol	11.28	41.57
TraesCS7A01G484100.1	Wheat	cytosol	11.89	39.39
TraesCS3A01G410700.1	Wheat	mitochondrion	41.46	38.86
CDY21989	Canola	cytosol	9.45	38.27
TraesCS2A01G153600.1	Wheat	cytosol, plastid	35.98	38.19
CDX73787	Canola	cytosol	29.27	37.5
TraesCS3A01G411000.1	Wheat	nucleus	38.72	37.46
CDY48578	Canola	cytosol	28.66	37.45
TraesCS2A01G313400.1	Wheat	cytosol	35.06	36.98
Bra034230.1-P	Field mustard	cytosol	29.57	36.88
TraesCS7A01G193100.1	Wheat	cytosol	34.45	36.69
Solyc08g013780.1.1	Tomato	cytosol	13.72	36.59
CDX99649	Canola	cytosol	25.91	36.48
TraesCS5A01G471800.1	Wheat	cytosol	22.56	36.45
Bra000723.1-P	Field mustard	cytosol	16.77	36.18
Bra034226.1-P	Field mustard	cytosol	31.71	36.11
Bra030342.1-P	Field mustard	cytosol	25.61	36.05
CDY21988	Canola	cytosol	16.46	35.76
CDY15937	Canola	cytosol	25.3	35.62
CDY48574	Canola	cytosol	32.32	35.57
CDX90789	Canola	cytosol	32.62	35.55
KRH21099	Soybean	cytosol	33.54	35.37
CDY48580	Canola	cytosol	32.62	34.85
Bra034229.1-P	Field mustard	cytosol	29.27	34.78
VIT_10s0003g04300.t01	Wine grape	cytosol	33.84	34.58
Solyc08g006940.2.1	Tomato	cytosol	32.62	34.41
KRH11147	Soybean	cytosol	33.23	34.28
Bra034227.1-P	Field mustard	plastid	33.23	34.28
Bra034231.1-P	Field mustard	cytosol, plastid	26.83	33.98
TraesCS1A01G128000.1	Wheat	cytosol	24.09	33.91
PGSC0003DMT400052833	Potato	cytosol	28.35	33.82
AT4G05460.1	Thale cress	cytosol	30.79	33.44
CDY48575	Canola	plastid	32.32	33.44
Bra000817.1-P	Field mustard	plastid	18.29	33.33
AT5G52480.1	Thale cress	cytosol	24.39	33.2
Bra030690.1-P	Field mustard	cytosol	28.35	33.1
CDY15618	Canola	cytosol	28.35	33.1
CDY21333	Canola	nucleus, plastid	29.57	32.99
CDX86473	Canola	cytosol	25.61	32.81
PGSC0003DMT400016134	Potato	cytosol	28.96	32.76
AT4G03630.1	Thale cress	cytosol	21.95	32.73
CDY59275	Canola	plastid	31.71	32.4
PGSC0003DMT400015035	Potato	cytosol	30.18	32.35
PGSC0003DMT400090939	Potato	cytosol	29.88	32.34
CDY48577	Canola	cytosol	27.44	31.91
AT4G05475.1	Thale cress	cytosol	29.88	31.72
CDY48576	Canola	cytosol	28.66	31.65
Solyc08g013800.2.1	Tomato	cytosol	28.35	31.63
CDX77948	Canola	cytosol	16.16	31.36
CDY62000	Canola	plastid	31.1	31.0
AT4G05490.1	Thale cress	plastid	28.96	30.94
AT4G05497.1	Thale cress	plastid	23.17	30.89
PGSC0003DMT400015030	Potato	cytosol	27.74	30.74
Bra034228.1-P	Field mustard	cytosol	27.74	30.64
TraesCS2A01G119000.1	Wheat	nucleus	40.24	30.56
Bra000816.1-P	Field mustard	plastid	30.18	30.46
AT4G05470.1	Thale cress	cytosol, plastid	28.35	30.39
CDY21986	Canola	cytosol, plastid	27.74	30.33
CDY09910	Canola	nucleus	28.66	29.38
CDY10283	Canola	cytosol	28.05	29.3
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	30.18	29.03
PGSC0003DMT400054358	Potato	cytosol	28.96	28.02
CDY06267	Canola	nucleus	29.27	27.59
CDY21990	Canola	cytosol	15.85	27.08
Bra031582.1-P	Field mustard	nucleus	28.66	26.86
TraesCS6A01G090000.1	Wheat	mitochondrion	28.35	26.35
Solyc08g013820.2.1	Tomato	cytosol	29.88	26.34
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	22.26	24.09
CDY21983	Canola	cytosol	20.73	24.03
TraesCS6A01G051000.1	Wheat	plastid	26.83	23.66
TraesCS3A01G417500.1	Wheat	cytosol	24.39	20.46
TraesCS3A01G417400.1	Wheat	cytosol	30.79	20.36
Bra020205.1-P	Field mustard	plastid	31.1	17.99
CDY09154	Canola	plastid	31.1	17.99
Bra034194.1-P	Field mustard	cytosol	29.27	17.94
CDY22112	Canola	cytosol	25.0	17.01

Protein Annotations

EnsemblPlants:TraesCS1A01G033100.1	EnsemblPlantsGene:TraesCS1A01G033100	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44078	PANTHER:PTHR44078:SF4	PFAM:PF12937	PFscan:PS50181	SEG:seg
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1A:-:15438542..15441281

Molecular Weight (calculated)

36129.2 Da

IEP (calculated)

3.924

GRAVY (calculated)

-0.237

Length

328 amino acids

Sequence
(BLAST)

001: MEEDAGEGEG EVEIRDWAGM PSDALFAVFG KLDVADILTG AGRACRAWRR LADGDPALWR RLDMTHHGDI LETEEAEAMA RAAVDRAAGT LQSFCADTFV
101: TDALLSYISG RAPSLKSLQL SLCDEVSNEA LAEAVKGFPQ LEELEITFCS LNSNVCELVG RACPQLKSFR LNERWTILQR GFAAFEGMDD DTGALGIASS
201: MPELRDLQLI GNNLTNTGLA AILDHCPRLE SLDVRRCCNL QMDDALRSKC ARIGNLRLPR DPISDFKYRA YLTISDDYPG GSDIEVDMYD DLLDVVTDDE
301: DADFDDMDDY IDGVGSDADM YDDVFDDV

Best Arabidopsis Sequence Match ( AT4G05475.1 )
(BLAST)

001: MATSTTLQSL LMKEDEEQRN KRRTTSTMFL KKDDEERINW VDLPPELTTS ILLRLSVTDI LDNARKLCRA WRRICKDPSM WRKINLRDCL MYEFDFESMC
101: RHIVDLSQGG LLEINIEHFV SDSLLSYIVD RSCNLKSLGI SIYEPMTNKG VMNGIEKLPL LETLVIFHSS IKLDLKAIGH ACPQLKTLKL NSLGSELAHD
201: ISQVGYIPLL ECDDDALAIA ESMPKLRHLQ LMGNGLTNTG LNAILDGCPH LEEHLDVRKC FNINLVGNLE KRCMKRIKEL RRPHDSTADY PYSISVSMVV
301: QMMITSRYH

Arabidopsis Description

Putative F-box protein At4g05475 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.