Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Solyc01g099290.2.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G05460.1 | Solyc01g099290.2.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400090939 | Potato | cytosol | 84.24 | 86.47 |
VIT_10s0003g04300.t01 | Wine grape | cytosol | 52.41 | 50.78 |
KRH21099 | Soybean | cytosol | 48.55 | 48.55 |
CDY21989 | Canola | cytosol | 12.22 | 46.91 |
KRH11147 | Soybean | cytosol | 46.95 | 45.91 |
Solyc08g013800.2.1 | Tomato | cytosol | 42.44 | 44.9 |
AT4G05460.1 | Thale cress | cytosol | 43.41 | 44.7 |
Bra000817.1-P | Field mustard | plastid | 25.4 | 43.89 |
AT4G03630.1 | Thale cress | cytosol | 30.87 | 43.64 |
CDX99649 | Canola | cytosol | 32.48 | 43.35 |
CDY15937 | Canola | cytosol | 32.48 | 43.35 |
CDY21333 | Canola | nucleus, plastid | 40.84 | 43.2 |
Solyc08g013780.1.1 | Tomato | cytosol | 17.04 | 43.09 |
Bra030342.1-P | Field mustard | cytosol | 32.15 | 42.92 |
CDY48578 | Canola | cytosol | 34.41 | 42.63 |
CDY09910 | Canola | nucleus | 43.41 | 42.19 |
Bra034230.1-P | Field mustard | cytosol | 35.37 | 41.83 |
CDX90789 | Canola | cytosol | 40.19 | 41.53 |
Bra034227.1-P | Field mustard | plastid | 42.44 | 41.51 |
CDY48574 | Canola | cytosol | 39.55 | 41.28 |
CDX73787 | Canola | cytosol | 33.76 | 41.02 |
Bra000723.1-P | Field mustard | cytosol | 19.94 | 40.79 |
Bra034226.1-P | Field mustard | cytosol | 37.62 | 40.62 |
Bra030690.1-P | Field mustard | cytosol | 36.66 | 40.57 |
CDY15618 | Canola | cytosol | 36.66 | 40.57 |
CDY48580 | Canola | cytosol | 39.87 | 40.39 |
CDY48575 | Canola | plastid | 41.16 | 40.38 |
CDX86473 | Canola | cytosol | 33.12 | 40.23 |
Bra034231.1-P | Field mustard | cytosol, plastid | 33.12 | 39.77 |
CDY21988 | Canola | cytosol | 19.29 | 39.74 |
Bra000816.1-P | Field mustard | plastid | 40.51 | 38.77 |
AT4G05497.1 | Thale cress | plastid | 30.55 | 38.62 |
CDY48576 | Canola | cytosol | 36.66 | 38.38 |
CDY21986 | Canola | cytosol, plastid | 36.66 | 38.0 |
CDY62000 | Canola | plastid | 40.19 | 37.99 |
CDY06267 | Canola | nucleus | 42.44 | 37.93 |
Bra031582.1-P | Field mustard | nucleus | 42.44 | 37.71 |
Solyc08g013820.2.1 | Tomato | cytosol | 44.69 | 37.37 |
AT5G52480.1 | Thale cress | cytosol | 28.94 | 37.34 |
Bra034228.1-P | Field mustard | cytosol | 35.37 | 37.04 |
Bra034229.1-P | Field mustard | cytosol | 32.48 | 36.59 |
CDY59275 | Canola | plastid | 37.62 | 36.45 |
CDY48577 | Canola | cytosol | 32.8 | 36.17 |
AT4G05490.1 | Thale cress | plastid | 35.69 | 36.16 |
CDY10283 | Canola | cytosol | 36.33 | 35.99 |
TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 30.23 | 35.21 |
AT4G05470.1 | Thale cress | cytosol, plastid | 34.08 | 34.64 |
AT4G05475.1 | Thale cress | cytosol | 34.41 | 34.63 |
CDX77948 | Canola | cytosol | 18.33 | 33.73 |
TraesCS3B01G443100.1 | Wheat | cytosol | 27.33 | 32.95 |
TraesCS1A01G033100.1 | Wheat | cytosol | 34.41 | 32.62 |
Zm00001d010914_P001 | Maize | cytosol | 34.08 | 32.42 |
KXG24675 | Sorghum | cytosol | 29.9 | 32.29 |
TraesCS5B01G081700.1 | Wheat | cytosol | 17.04 | 31.93 |
CDY21990 | Canola | cytosol | 19.61 | 31.77 |
Zm00001d024252_P001 | Maize | cytosol | 26.69 | 31.44 |
EES17669 | Sorghum | cytosol | 33.44 | 31.33 |
HORVU2Hr1G027710.1 | Barley | cytosol | 29.26 | 31.27 |
TraesCS1B01G041200.1 | Wheat | cytosol | 33.12 | 31.21 |
TraesCS1D01G034100.1 | Wheat | cytosol | 32.8 | 31.1 |
TraesCS4B01G183800.1 | Wheat | cytosol | 30.23 | 30.72 |
HORVU1Hr1G004970.3 | Barley | cytosol | 31.83 | 30.56 |
TraesCS7A01G193100.1 | Wheat | cytosol | 30.23 | 30.52 |
TraesCS5D01G088900.1 | Wheat | cytosol | 29.9 | 30.39 |
TraesCS7A01G484100.1 | Wheat | cytosol | 9.65 | 30.3 |
TraesCS7D01G194300.1 | Wheat | cytosol | 29.26 | 30.23 |
TraesCS7B01G098400.1 | Wheat | cytosol | 29.9 | 30.19 |
Os02t0317300-01 | Rice | cytosol | 31.83 | 30.18 |
TraesCS4B01G183700.1 | Wheat | cytosol | 28.62 | 30.17 |
HORVU2Hr1G027770.2 | Barley | mitochondrion | 29.26 | 30.13 |
TraesCS5A01G075400.1 | Wheat | cytosol | 29.58 | 30.07 |
HORVU0Hr1G019800.1 | Barley | cytosol | 29.9 | 30.0 |
TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 16.4 | 29.65 |
TraesCS5A01G471800.1 | Wheat | cytosol | 19.29 | 29.56 |
TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 29.26 | 29.45 |
TraesCS7D01G194400.1 | Wheat | extracellular | 29.9 | 29.43 |
Os08t0194350-00 | Rice | cytosol | 25.08 | 29.32 |
TraesCS5B01G484500.1 | Wheat | cytosol | 19.29 | 29.27 |
TraesCS7B01G205200.1 | Wheat | mitochondrion | 32.48 | 29.19 |
TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 32.48 | 29.19 |
OQU80176 | Sorghum | mitochondrion | 20.9 | 29.15 |
TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 16.08 | 29.07 |
TraesCS5D01G484300.1 | Wheat | cytosol | 18.97 | 29.06 |
TraesCS2D01G070200.1 | Wheat | cytosol | 30.23 | 29.01 |
TraesCS2B01G085200.1 | Wheat | cytosol | 29.9 | 28.7 |
EES14679 | Sorghum | nucleus | 31.51 | 28.49 |
TraesCS7B01G287400.1 | Wheat | cytosol | 29.58 | 28.48 |
TraesCS2B01G178700.1 | Wheat | plastid | 28.3 | 28.48 |
Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 31.51 | 28.32 |
TraesCS1D01G126200.1 | Wheat | nucleus | 26.37 | 28.18 |
TraesCS5B01G484100.1 | Wheat | cytosol | 20.26 | 28.12 |
TraesCS3B01G444000.1 | Wheat | nucleus | 31.51 | 28.0 |
TraesCS5B01G484600.1 | Wheat | cytosol | 18.65 | 27.88 |
TraesCS2D01G159000.1 | Wheat | plastid | 27.65 | 27.83 |
TraesCS2B01G085400.1 | Wheat | cytosol | 28.62 | 27.81 |
TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 18.01 | 27.72 |
TraesCS2A01G313400.1 | Wheat | cytosol | 27.65 | 27.65 |
TraesCS5B01G484300.1 | Wheat | cytosol | 18.01 | 27.59 |
CDY21983 | Canola | cytosol | 25.08 | 27.56 |
TraesCS3B01G443800.1 | Wheat | nucleus | 30.55 | 27.54 |
Os11t0637300-00 | Rice | cytosol | 10.61 | 27.5 |
Zm00001d024764_P001 | Maize | cytosol | 31.51 | 27.45 |
TraesCS3A01G410700.1 | Wheat | mitochondrion | 30.87 | 27.43 |
TraesCS2A01G071400.1 | Wheat | cytosol | 9.32 | 27.36 |
HORVU5Hr1G020150.1 | Barley | mitochondrion | 29.58 | 27.14 |
OQU80048 | Sorghum | cytosol | 24.76 | 27.02 |
TraesCS7D01G381100.1 | Wheat | mitochondrion | 29.58 | 26.98 |
Os02t0317500-01 | Rice | cytosol | 28.62 | 26.97 |
TraesCS3D01G405300.1 | Wheat | nucleus | 30.23 | 26.86 |
TraesCS2B01G332200.1 | Wheat | cytosol | 27.01 | 26.84 |
TraesCS2D01G311900.1 | Wheat | cytosol | 27.01 | 26.84 |
KXG24670 | Sorghum | cytosol | 27.33 | 26.81 |
TraesCS5B01G466500.1 | Wheat | extracellular | 9.0 | 26.67 |
TraesCS1A01G128000.1 | Wheat | cytosol | 19.94 | 26.61 |
Zm00001d024265_P001 | Maize | cytosol | 25.4 | 26.33 |
TraesCS3A01G411000.1 | Wheat | nucleus | 28.62 | 26.25 |
TraesCS7B01G480000.1 | Wheat | cytosol | 26.69 | 25.86 |
TraesCS5B01G284300.1 | Wheat | cytosol | 28.3 | 25.58 |
TraesCS5D01G292400.1 | Wheat | cytosol | 27.97 | 25.29 |
Os08t0193200-00 | Rice | cytosol | 9.32 | 25.22 |
Os08t0193900-01 | Rice | nucleus | 31.83 | 25.0 |
TraesCS7D01G203600.1 | Wheat | plastid | 27.33 | 24.93 |
TraesCS7D01G555100.1 | Wheat | cytosol | 26.69 | 24.78 |
TraesCS7D01G203500.1 | Wheat | plastid | 27.01 | 24.71 |
HORVU2Hr1G020540.2 | Barley | cytosol | 22.19 | 24.56 |
Zm00001d046526_P001 | Maize | plastid | 22.19 | 24.38 |
Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 17.36 | 24.32 |
TraesCS6B01G067700.1 | Wheat | plastid | 20.9 | 24.25 |
TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 27.01 | 24.14 |
TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 17.36 | 24.11 |
Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 23.15 | 23.76 |
TraesCS3B01G452600.1 | Wheat | extracellular | 24.76 | 23.33 |
TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 14.47 | 23.32 |
Os08t0193500-00 | Rice | cytosol | 16.08 | 22.83 |
HORVU2Hr1G077990.2 | Barley | plastid | 27.33 | 22.73 |
TraesCS6A01G090000.1 | Wheat | mitochondrion | 25.4 | 22.38 |
TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 24.44 | 22.29 |
HORVU6Hr1G014660.1 | Barley | cytosol | 15.11 | 22.07 |
Bra034194.1-P | Field mustard | cytosol | 37.94 | 22.06 |
TraesCSU01G016500.1 | Wheat | mitochondrion | 25.08 | 22.03 |
TraesCS6B01G112100.1 | Wheat | mitochondrion | 24.44 | 21.71 |
TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 16.72 | 21.4 |
TraesCS2D01G011000.1 | Wheat | cytosol | 21.54 | 21.07 |
TraesCS2A01G119000.1 | Wheat | nucleus | 28.62 | 20.6 |
CDY22112 | Canola | cytosol | 31.83 | 20.54 |
EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 30.87 | 20.43 |
TraesCS4D01G274100.1 | Wheat | cytosol | 9.32 | 20.42 |
HORVU2Hr1G020470.1 | Barley | mitochondrion | 7.72 | 20.34 |
TraesCS6B01G112000.1 | Wheat | mitochondrion | 22.51 | 20.29 |
Bra020205.1-P | Field mustard | plastid | 36.98 | 20.28 |
CDY09154 | Canola | plastid | 36.98 | 20.28 |
TraesCS6B01G310200.1 | Wheat | plastid | 23.47 | 20.22 |
Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 16.08 | 20.0 |
Os08t0191300-00 | Rice | cytosol, golgi | 16.4 | 19.84 |
HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 18.97 | 19.73 |
TraesCS6A01G051000.1 | Wheat | plastid | 23.15 | 19.35 |
TraesCSU01G016600.1 | Wheat | mitochondrion | 16.72 | 19.26 |
HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 28.94 | 18.99 |
Os08t0193300-00 | Rice | cytosol | 20.26 | 18.92 |
TraesCS3B01G452400.1 | Wheat | cytosol | 26.69 | 18.65 |
TraesCS3B01G452500.1 | Wheat | cytosol | 28.3 | 18.6 |
TraesCS3B01G452300.1 | Wheat | plastid | 27.65 | 18.49 |
TraesCS3D01G413000.1 | Wheat | cytosol | 26.05 | 18.49 |
HORVU6Hr1G070700.2 | Barley | mitochondrion | 23.47 | 18.43 |
TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 27.65 | 18.38 |
TraesCS3A01G417400.1 | Wheat | cytosol | 27.65 | 17.34 |
Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 16.72 | 17.22 |
OQU80174 | Sorghum | cytosol | 7.4 | 17.16 |
TraesCS3A01G417500.1 | Wheat | cytosol | 21.22 | 16.88 |
TraesCS5D01G484100.1 | Wheat | cytosol | 17.68 | 14.82 |
Os08t0196200-01 | Rice | cytosol | 7.72 | 8.76 |
Os08t0194000-00 | Rice | cytosol, vacuole | 0.96 | 0.79 |
Protein Annotations
Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | UniProt:K4CII1 | InterPro:LRR_dom_sf |
InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | SMART:SM00367 |
SUPFAM:SSF52047 | SUPFAM:SSF81383 | EnsemblPlantsGene:Solyc08g006940.2 | EnsemblPlants:Solyc08g006940.2.1 | UniParc:UPI000276C246 | SEG:seg |
Description
No Description!
Coordinates
chr8:-:1501362..1504493
Molecular Weight (calculated)
35538.6 Da
IEP (calculated)
4.178
GRAVY (calculated)
-0.510
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEDMENSI APPWLELPPE ITSSILQKVG PIEMLKSADK VCSYWRRLCH EPAMWRVVKM QNAGADFWDR EDDLEKICGR AVECSNGELV DLSLEYFGSD
101: NLLSYIAGRS PQLKRLRLVC SYNVSAVGFS AAVKKFPLLE ELHLYYVGIS KEAIETIGRS CRGLKSFKLN NQICRHPYIE YDDEAIAIAQ NMPELRHLQL
201: LGNKMTNEGL EAILNGCPRL ESLDLRRCLN VQLEGELGKR CSSQIKSLRH PEDPTEDYGL DTEMHDFESF DEDYPSGFSD IDLISDDDDD YEFSYGSNYS
301: DDDDDDEMFD Y
101: NLLSYIAGRS PQLKRLRLVC SYNVSAVGFS AAVKKFPLLE ELHLYYVGIS KEAIETIGRS CRGLKSFKLN NQICRHPYIE YDDEAIAIAQ NMPELRHLQL
201: LGNKMTNEGL EAILNGCPRL ESLDLRRCLN VQLEGELGKR CSSQIKSLRH PEDPTEDYGL DTEMHDFESF DEDYPSGFSD IDLISDDDDD YEFSYGSNYS
301: DDDDDDEMFD Y
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.