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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g099290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G05460.1 Solyc01g099290.2.1 AT4G02570.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400090939 Potato cytosol 84.24 86.47
VIT_10s0003g04300.t01 Wine grape cytosol 52.41 50.78
KRH21099 Soybean cytosol 48.55 48.55
CDY21989 Canola cytosol 12.22 46.91
KRH11147 Soybean cytosol 46.95 45.91
Solyc08g013800.2.1 Tomato cytosol 42.44 44.9
AT4G05460.1 Thale cress cytosol 43.41 44.7
Bra000817.1-P Field mustard plastid 25.4 43.89
AT4G03630.1 Thale cress cytosol 30.87 43.64
CDX99649 Canola cytosol 32.48 43.35
CDY15937 Canola cytosol 32.48 43.35
CDY21333 Canola nucleus, plastid 40.84 43.2
Solyc08g013780.1.1 Tomato cytosol 17.04 43.09
Bra030342.1-P Field mustard cytosol 32.15 42.92
CDY48578 Canola cytosol 34.41 42.63
CDY09910 Canola nucleus 43.41 42.19
Bra034230.1-P Field mustard cytosol 35.37 41.83
CDX90789 Canola cytosol 40.19 41.53
Bra034227.1-P Field mustard plastid 42.44 41.51
CDY48574 Canola cytosol 39.55 41.28
CDX73787 Canola cytosol 33.76 41.02
Bra000723.1-P Field mustard cytosol 19.94 40.79
Bra034226.1-P Field mustard cytosol 37.62 40.62
Bra030690.1-P Field mustard cytosol 36.66 40.57
CDY15618 Canola cytosol 36.66 40.57
CDY48580 Canola cytosol 39.87 40.39
CDY48575 Canola plastid 41.16 40.38
CDX86473 Canola cytosol 33.12 40.23
Bra034231.1-P Field mustard cytosol, plastid 33.12 39.77
CDY21988 Canola cytosol 19.29 39.74
Bra000816.1-P Field mustard plastid 40.51 38.77
AT4G05497.1 Thale cress plastid 30.55 38.62
CDY48576 Canola cytosol 36.66 38.38
CDY21986 Canola cytosol, plastid 36.66 38.0
CDY62000 Canola plastid 40.19 37.99
CDY06267 Canola nucleus 42.44 37.93
Bra031582.1-P Field mustard nucleus 42.44 37.71
Solyc08g013820.2.1 Tomato cytosol 44.69 37.37
AT5G52480.1 Thale cress cytosol 28.94 37.34
Bra034228.1-P Field mustard cytosol 35.37 37.04
Bra034229.1-P Field mustard cytosol 32.48 36.59
CDY59275 Canola plastid 37.62 36.45
CDY48577 Canola cytosol 32.8 36.17
AT4G05490.1 Thale cress plastid 35.69 36.16
CDY10283 Canola cytosol 36.33 35.99
TraesCS7A01G304900.1 Wheat mitochondrion, nucleus 30.23 35.21
AT4G05470.1 Thale cress cytosol, plastid 34.08 34.64
AT4G05475.1 Thale cress cytosol 34.41 34.63
CDX77948 Canola cytosol 18.33 33.73
TraesCS3B01G443100.1 Wheat cytosol 27.33 32.95
TraesCS1A01G033100.1 Wheat cytosol 34.41 32.62
Zm00001d010914_P001 Maize cytosol 34.08 32.42
KXG24675 Sorghum cytosol 29.9 32.29
TraesCS5B01G081700.1 Wheat cytosol 17.04 31.93
CDY21990 Canola cytosol 19.61 31.77
Zm00001d024252_P001 Maize cytosol 26.69 31.44
EES17669 Sorghum cytosol 33.44 31.33
HORVU2Hr1G027710.1 Barley cytosol 29.26 31.27
TraesCS1B01G041200.1 Wheat cytosol 33.12 31.21
TraesCS1D01G034100.1 Wheat cytosol 32.8 31.1
TraesCS4B01G183800.1 Wheat cytosol 30.23 30.72
HORVU1Hr1G004970.3 Barley cytosol 31.83 30.56
TraesCS7A01G193100.1 Wheat cytosol 30.23 30.52
TraesCS5D01G088900.1 Wheat cytosol 29.9 30.39
TraesCS7A01G484100.1 Wheat cytosol 9.65 30.3
TraesCS7D01G194300.1 Wheat cytosol 29.26 30.23
TraesCS7B01G098400.1 Wheat cytosol 29.9 30.19
Os02t0317300-01 Rice cytosol 31.83 30.18
TraesCS4B01G183700.1 Wheat cytosol 28.62 30.17
HORVU2Hr1G027770.2 Barley mitochondrion 29.26 30.13
TraesCS5A01G075400.1 Wheat cytosol 29.58 30.07
HORVU0Hr1G019800.1 Barley cytosol 29.9 30.0
TraesCS5D01G100900.1 Wheat endoplasmic reticulum 16.4 29.65
TraesCS5A01G471800.1 Wheat cytosol 19.29 29.56
TraesCS2A01G153600.1 Wheat cytosol, plastid 29.26 29.45
TraesCS7D01G194400.1 Wheat extracellular 29.9 29.43
Os08t0194350-00 Rice cytosol 25.08 29.32
TraesCS5B01G484500.1 Wheat cytosol 19.29 29.27
TraesCS7B01G205200.1 Wheat mitochondrion 32.48 29.19
TraesCS7D01G300400.1 Wheat mitochondrion, nucleus 32.48 29.19
OQU80176 Sorghum mitochondrion 20.9 29.15
TraesCS5B01G094800.1 Wheat endoplasmic reticulum 16.08 29.07
TraesCS5D01G484300.1 Wheat cytosol 18.97 29.06
TraesCS2D01G070200.1 Wheat cytosol 30.23 29.01
TraesCS2B01G085200.1 Wheat cytosol 29.9 28.7
EES14679 Sorghum nucleus 31.51 28.49
TraesCS7B01G287400.1 Wheat cytosol 29.58 28.48
TraesCS2B01G178700.1 Wheat plastid 28.3 28.48
Os08t0195800-00 Rice cytosol, mitochondrion, nucleus 31.51 28.32
TraesCS1D01G126200.1 Wheat nucleus 26.37 28.18
TraesCS5B01G484100.1 Wheat cytosol 20.26 28.12
TraesCS3B01G444000.1 Wheat nucleus 31.51 28.0
TraesCS5B01G484600.1 Wheat cytosol 18.65 27.88
TraesCS2D01G159000.1 Wheat plastid 27.65 27.83
TraesCS2B01G085400.1 Wheat cytosol 28.62 27.81
TraesCS5D01G468200.1 Wheat cytosol, plasma membrane, plastid 18.01 27.72
TraesCS2A01G313400.1 Wheat cytosol 27.65 27.65
TraesCS5B01G484300.1 Wheat cytosol 18.01 27.59
CDY21983 Canola cytosol 25.08 27.56
TraesCS3B01G443800.1 Wheat nucleus 30.55 27.54
Os11t0637300-00 Rice cytosol 10.61 27.5
Zm00001d024764_P001 Maize cytosol 31.51 27.45
TraesCS3A01G410700.1 Wheat mitochondrion 30.87 27.43
TraesCS2A01G071400.1 Wheat cytosol 9.32 27.36
HORVU5Hr1G020150.1 Barley mitochondrion 29.58 27.14
OQU80048 Sorghum cytosol 24.76 27.02
TraesCS7D01G381100.1 Wheat mitochondrion 29.58 26.98
Os02t0317500-01 Rice cytosol 28.62 26.97
TraesCS3D01G405300.1 Wheat nucleus 30.23 26.86
TraesCS2B01G332200.1 Wheat cytosol 27.01 26.84
TraesCS2D01G311900.1 Wheat cytosol 27.01 26.84
KXG24670 Sorghum cytosol 27.33 26.81
TraesCS5B01G466500.1 Wheat extracellular 9.0 26.67
TraesCS1A01G128000.1 Wheat cytosol 19.94 26.61
Zm00001d024265_P001 Maize cytosol 25.4 26.33
TraesCS3A01G411000.1 Wheat nucleus 28.62 26.25
TraesCS7B01G480000.1 Wheat cytosol 26.69 25.86
TraesCS5B01G284300.1 Wheat cytosol 28.3 25.58
TraesCS5D01G292400.1 Wheat cytosol 27.97 25.29
Os08t0193200-00 Rice cytosol 9.32 25.22
Os08t0193900-01 Rice nucleus 31.83 25.0
TraesCS7D01G203600.1 Wheat plastid 27.33 24.93
TraesCS7D01G555100.1 Wheat cytosol 26.69 24.78
TraesCS7D01G203500.1 Wheat plastid 27.01 24.71
HORVU2Hr1G020540.2 Barley cytosol 22.19 24.56
Zm00001d046526_P001 Maize plastid 22.19 24.38
Zm00001d046527_P001 Maize extracellular, mitochondrion, nucleus 17.36 24.32
TraesCS6B01G067700.1 Wheat plastid 20.9 24.25
TraesCS3D01G413100.1 Wheat cytosol, endoplasmic reticulum, vacuole 27.01 24.14
TraesCS2B01G385500.1 Wheat cytosol, plasma membrane, plastid 17.36 24.11
Solyc08g006920.1.1 Tomato cytosol, mitochondrion, nucleus 23.15 23.76
TraesCS3B01G452600.1 Wheat extracellular 24.76 23.33
TraesCS5B01G484200.1 Wheat cytosol, peroxisome, plastid 14.47 23.32
Os08t0193500-00 Rice cytosol 16.08 22.83
HORVU2Hr1G077990.2 Barley plastid 27.33 22.73
TraesCS6A01G090000.1 Wheat mitochondrion 25.4 22.38
TraesCS6A01G089600.1 Wheat cytosol, mitochondrion 24.44 22.29
HORVU6Hr1G014660.1 Barley cytosol 15.11 22.07
Bra034194.1-P Field mustard cytosol 37.94 22.06
TraesCSU01G016500.1 Wheat mitochondrion 25.08 22.03
TraesCS6B01G112100.1 Wheat mitochondrion 24.44 21.71
TraesCS6B01G067500.1 Wheat cytosol, extracellular 16.72 21.4
TraesCS2D01G011000.1 Wheat cytosol 21.54 21.07
TraesCS2A01G119000.1 Wheat nucleus 28.62 20.6
CDY22112 Canola cytosol 31.83 20.54
EES14677 Sorghum cytosol, mitochondrion, nucleus, plastid 30.87 20.43
TraesCS4D01G274100.1 Wheat cytosol 9.32 20.42
HORVU2Hr1G020470.1 Barley mitochondrion 7.72 20.34
TraesCS6B01G112000.1 Wheat mitochondrion 22.51 20.29
Bra020205.1-P Field mustard plastid 36.98 20.28
CDY09154 Canola plastid 36.98 20.28
TraesCS6B01G310200.1 Wheat plastid 23.47 20.22
Os08t0195000-00 Rice cytosol, peroxisome, plastid 16.08 20.0
Os08t0191300-00 Rice cytosol, golgi 16.4 19.84
HORVU6Hr1G070690.2 Barley extracellular, mitochondrion, plasma membrane 18.97 19.73
TraesCS6A01G051000.1 Wheat plastid 23.15 19.35
TraesCSU01G016600.1 Wheat mitochondrion 16.72 19.26
HORVU3Hr1G092720.1 Barley cytosol, mitochondrion, nucleus 28.94 18.99
Os08t0193300-00 Rice cytosol 20.26 18.92
TraesCS3B01G452400.1 Wheat cytosol 26.69 18.65
TraesCS3B01G452500.1 Wheat cytosol 28.3 18.6
TraesCS3B01G452300.1 Wheat plastid 27.65 18.49
TraesCS3D01G413000.1 Wheat cytosol 26.05 18.49
HORVU6Hr1G070700.2 Barley mitochondrion 23.47 18.43
TraesCS3D01G412900.1 Wheat cytosol, plastid 27.65 18.38
TraesCS3A01G417400.1 Wheat cytosol 27.65 17.34
Os08t0195900-00 Rice cytosol, mitochondrion, nucleus, plastid 16.72 17.22
OQU80174 Sorghum cytosol 7.4 17.16
TraesCS3A01G417500.1 Wheat cytosol 21.22 16.88
TraesCS5D01G484100.1 Wheat cytosol 17.68 14.82
Os08t0196200-01 Rice cytosol 7.72 8.76
Os08t0194000-00 Rice cytosol, vacuole 0.96 0.79
Protein Annotations
Gene3D:1.20.1280.50Gene3D:3.80.10.10MapMan:35.1InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674
GO:GO:0005488GO:GO:0005515InterPro:IPR001810InterPro:IPR032675UniProt:K4CII1InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtypPFAM:PF12937PFscan:PS50181PANTHER:PTHR44078PANTHER:PTHR44078:SF5SMART:SM00367
SUPFAM:SSF52047SUPFAM:SSF81383EnsemblPlantsGene:Solyc08g006940.2EnsemblPlants:Solyc08g006940.2.1UniParc:UPI000276C246SEG:seg
Description
No Description!
Coordinates
chr8:-:1501362..1504493
Molecular Weight (calculated)
35538.6 Da
IEP (calculated)
4.178
GRAVY (calculated)
-0.510
Length
311 amino acids
Sequence
(BLAST)
001: MEAEDMENSI APPWLELPPE ITSSILQKVG PIEMLKSADK VCSYWRRLCH EPAMWRVVKM QNAGADFWDR EDDLEKICGR AVECSNGELV DLSLEYFGSD
101: NLLSYIAGRS PQLKRLRLVC SYNVSAVGFS AAVKKFPLLE ELHLYYVGIS KEAIETIGRS CRGLKSFKLN NQICRHPYIE YDDEAIAIAQ NMPELRHLQL
201: LGNKMTNEGL EAILNGCPRL ESLDLRRCLN VQLEGELGKR CSSQIKSLRH PEDPTEDYGL DTEMHDFESF DEDYPSGFSD IDLISDDDDD YEFSYGSNYS
301: DDDDDDEMFD Y
Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.