Factsheet for TraesCSU01G016600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	81.85	64.81
TraesCS6B01G112000.1	Wheat	mitochondrion	81.85	64.06
TraesCSU01G016500.1	Wheat	mitochondrion	55.19	42.09
TraesCS7D01G203600.1	Wheat	plastid	43.7	34.6
TraesCS7D01G203500.1	Wheat	plastid	42.59	33.82
CDY21989	Canola	cytosol	7.78	25.93
Bra034231.1-P	Field mustard	cytosol, plastid	20.0	20.85
Zm00001d046526_P001	Maize	plastid	21.48	20.49
CDY15618	Canola	cytosol	20.37	19.57
Bra030690.1-P	Field mustard	cytosol	20.37	19.57
CDY21333	Canola	nucleus, plastid	21.11	19.39
Bra034228.1-P	Field mustard	cytosol	21.11	19.19
CDY48576	Canola	cytosol	21.11	19.19
CDX86473	Canola	cytosol	18.15	19.14
CDY48580	Canola	cytosol	21.48	18.89
Bra030342.1-P	Field mustard	cytosol	16.3	18.88
CDY15937	Canola	cytosol	16.3	18.88
CDX99649	Canola	cytosol	15.93	18.45
Bra000723.1-P	Field mustard	cytosol	10.37	18.42
VIT_10s0003g04300.t01	Wine grape	cytosol	21.85	18.38
CDY48578	Canola	cytosol	17.04	18.33
KRH21099	Soybean	cytosol	20.74	18.01
CDY21986	Canola	cytosol, plastid	20.0	18.0
CDY48575	Canola	plastid	21.11	17.98
AT4G05497.1	Thale cress	plastid	16.3	17.89
AT4G05460.1	Thale cress	cytosol	20.0	17.88
Bra034230.1-P	Field mustard	cytosol	17.41	17.87
CDY09910	Canola	nucleus	21.11	17.81
Solyc08g013800.2.1	Tomato	cytosol	19.26	17.69
PGSC0003DMT400015035	Potato	cytosol	20.0	17.65
Bra034227.1-P	Field mustard	plastid	20.74	17.61
AT4G05490.1	Thale cress	plastid	20.0	17.59
CDX73787	Canola	cytosol	16.67	17.58
AT4G05475.1	Thale cress	cytosol	20.0	17.48
Bra034229.1-P	Field mustard	cytosol	17.78	17.39
CDY48577	Canola	cytosol	18.15	17.38
KRH11147	Soybean	cytosol	20.37	17.3
Bra000816.1-P	Field mustard	plastid	20.74	17.23
CDY21988	Canola	cytosol	9.63	17.22
CDX77948	Canola	cytosol	10.74	17.16
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	14.07	17.12
Solyc08g013780.1.1	Tomato	cytosol	7.78	17.07
AT4G05470.1	Thale cress	cytosol, plastid	19.26	16.99
CDX90789	Canola	cytosol	18.89	16.94
Solyc08g006940.2.1	Tomato	cytosol	19.26	16.72
CDY59275	Canola	plastid	19.63	16.51
CDY62000	Canola	plastid	20.0	16.41
CDY48574	Canola	cytosol	17.78	16.11
CDY06267	Canola	nucleus	20.74	16.09
Bra034226.1-P	Field mustard	cytosol	17.04	15.97
CDY10283	Canola	cytosol	18.52	15.92
AT4G03630.1	Thale cress	cytosol	12.96	15.91
PGSC0003DMT400015030	Potato	cytosol	17.41	15.88
Bra031582.1-P	Field mustard	nucleus	20.37	15.71
PGSC0003DMT400052833	Potato	cytosol	15.93	15.64
PGSC0003DMT400090939	Potato	cytosol	17.41	15.51
PGSC0003DMT400058969	Potato	cytosol	4.81	14.61
CDY21990	Canola	cytosol	10.37	14.58
AT5G52480.1	Thale cress	cytosol	12.96	14.52
PGSC0003DMT400016134	Potato	cytosol	15.56	14.48
Solyc08g013820.2.1	Tomato	cytosol	19.63	14.25
Bra000817.1-P	Field mustard	plastid	9.26	13.89
PGSC0003DMT400054358	Potato	cytosol	16.67	13.27
Bra034194.1-P	Field mustard	cytosol	20.74	10.47
Bra020205.1-P	Field mustard	plastid	20.0	9.52
CDY09154	Canola	plastid	20.0	9.52
CDY21983	Canola	cytosol	9.63	9.19
CDY22112	Canola	cytosol	16.3	9.13
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	9.63	8.58

Protein Annotations

EnsemblPlants:TraesCSU01G016600.1	EnsemblPlantsGene:TraesCSU01G016600	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44078	PANTHER:PTHR44078:SF3	PFAM:PF12937	SEG:seg	SUPFAM:SSF52047	SUPFAM:SSF81383
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:19128724..19130130

Molecular Weight (calculated)

31501.5 Da

IEP (calculated)

4.744

GRAVY (calculated)

-0.526

Length

270 amino acids

Sequence
(BLAST)

001: MPPLARASQR IRYSKKQRAP PPPPPPPERD WAELHPDLIS CILHRLDQAE LLVGGVAGVC RSWRRAAREE PELWRHINLR EGMWYVPTFC PEFSVNAIVG
101: KALRLGAGQT EAFLSEGIDD HTLLLLAQRV ASMVARMHKL RSLHLVRLML DNEELATILD KCHDLEYLNM QECSLVDMDN MDDNLRVKLA QINMDNPEYS
201: SDQQVDYEYK ILPIYDYREL RDDWHSYYPD YNDSYEEYCY YIGSGDGIAD ADLEEYEKIL DIKSMRRYLS

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.