Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48576 | Canola | cytosol | 92.33 | 93.27 |
| CDY21988 | Canola | cytosol | 32.0 | 63.58 |
| CDY48580 | Canola | cytosol | 60.67 | 59.28 |
| CDY48577 | Canola | cytosol | 55.67 | 59.22 |
| CDY48578 | Canola | cytosol | 49.0 | 58.57 |
| CDY48574 | Canola | cytosol | 56.0 | 56.38 |
| CDY21333 | Canola | nucleus, plastid | 55.0 | 56.12 |
| CDY59275 | Canola | plastid | 60.0 | 56.07 |
| CDY09910 | Canola | nucleus | 57.0 | 53.44 |
| CDX99649 | Canola | cytosol | 40.67 | 52.36 |
| CDY21989 | Canola | cytosol | 14.0 | 51.85 |
| CDY62000 | Canola | plastid | 56.67 | 51.67 |
| CDY15937 | Canola | cytosol | 39.67 | 51.07 |
| CDX73787 | Canola | cytosol | 42.67 | 50.0 |
| CDY21990 | Canola | cytosol | 31.67 | 49.48 |
| CDX86473 | Canola | cytosol | 42.0 | 49.22 |
| CDX90789 | Canola | cytosol | 49.33 | 49.17 |
| CDY06267 | Canola | nucleus | 57.0 | 49.14 |
| CDY15618 | Canola | cytosol | 45.67 | 48.75 |
| CDY48575 | Canola | plastid | 51.33 | 48.58 |
| CDX77948 | Canola | cytosol | 27.0 | 47.93 |
| CDY10283 | Canola | cytosol | 48.0 | 45.86 |
| KRH21099 | Soybean | cytosol | 40.33 | 38.91 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 41.33 | 38.63 |
| PGSC0003DMT400058969 | Potato | cytosol | 11.33 | 38.2 |
| PGSC0003DMT400016134 | Potato | cytosol | 36.67 | 37.93 |
| KRH11147 | Soybean | cytosol | 39.0 | 36.79 |
| Solyc08g013800.2.1 | Tomato | cytosol | 36.0 | 36.73 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 32.67 | 36.7 |
| Solyc08g006940.2.1 | Tomato | cytosol | 38.0 | 36.66 |
| PGSC0003DMT400052833 | Potato | cytosol | 33.33 | 36.36 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 31.0 | 36.05 |
| PGSC0003DMT400015035 | Potato | cytosol | 36.67 | 35.95 |
| PGSC0003DMT400015030 | Potato | cytosol | 35.0 | 35.47 |
| Solyc08g013780.1.1 | Tomato | cytosol | 14.33 | 34.96 |
| PGSC0003DMT400090939 | Potato | cytosol | 34.67 | 34.32 |
| CDY22112 | Canola | cytosol | 53.33 | 33.2 |
| CDY21983 | Canola | cytosol | 31.0 | 32.86 |
| PGSC0003DMT400054358 | Potato | cytosol | 36.67 | 32.45 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 21.67 | 32.02 |
| CDY09154 | Canola | plastid | 59.67 | 31.57 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 18.0 | 31.4 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 21.0 | 31.03 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 30.0 | 30.93 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 17.67 | 30.81 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 17.0 | 30.72 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 29.67 | 30.58 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 35.0 | 30.43 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 35.0 | 30.35 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 29.67 | 30.17 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 34.67 | 30.06 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 20.33 | 30.05 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 23.33 | 30.04 |
| EES14679 | Sorghum | nucleus | 34.33 | 29.94 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 30.0 | 29.8 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 33.67 | 29.79 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 30.67 | 29.77 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 20.0 | 29.7 |
| Solyc08g013820.2.1 | Tomato | cytosol | 36.67 | 29.57 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 10.33 | 29.52 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 34.0 | 29.48 |
| TraesCS2B01G178700.1 | Wheat | plastid | 30.33 | 29.45 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 34.33 | 29.43 |
| Os08t0194350-00 | Rice | cytosol | 26.0 | 29.32 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 20.0 | 29.27 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 34.0 | 29.14 |
| TraesCS2D01G159000.1 | Wheat | plastid | 30.0 | 29.13 |
| Zm00001d010914_P001 | Maize | cytosol | 31.67 | 29.05 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 33.0 | 29.03 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 33.67 | 28.86 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 20.0 | 28.85 |
| KXG24675 | Sorghum | cytosol | 27.67 | 28.82 |
| Zm00001d024252_P001 | Maize | cytosol | 25.33 | 28.79 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 21.33 | 28.57 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 30.67 | 28.48 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 29.0 | 28.43 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 29.0 | 28.43 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 30.67 | 28.4 |
| Os02t0317300-01 | Rice | cytosol | 31.0 | 28.35 |
| EES17669 | Sorghum | cytosol | 31.33 | 28.31 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 29.33 | 28.3 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 29.33 | 28.11 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 29.33 | 28.11 |
| Os08t0193200-00 | Rice | cytosol | 10.67 | 27.83 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 28.33 | 27.78 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 30.33 | 27.74 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 30.33 | 27.74 |
| Zm00001d024265_P001 | Maize | cytosol | 27.33 | 27.33 |
| Os02t0317500-01 | Rice | cytosol | 30.0 | 27.27 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 28.0 | 27.27 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 28.0 | 27.27 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 27.33 | 27.24 |
| Zm00001d046526_P001 | Maize | plastid | 25.67 | 27.21 |
| KXG24670 | Sorghum | cytosol | 28.67 | 27.13 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 28.0 | 27.1 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 29.67 | 26.97 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 17.33 | 26.94 |
| Os11t0637300-00 | Rice | cytosol | 10.67 | 26.67 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 27.67 | 26.27 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 8.67 | 26.26 |
| Os08t0193500-00 | Rice | cytosol | 19.0 | 26.03 |
| TraesCS6B01G067700.1 | Wheat | plastid | 23.0 | 25.75 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 27.67 | 25.62 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 9.0 | 25.47 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 28.67 | 25.37 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 18.67 | 25.23 |
| OQU80176 | Sorghum | mitochondrion | 18.67 | 25.11 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 18.67 | 25.0 |
| TraesCS7D01G203500.1 | Wheat | plastid | 28.33 | 25.0 |
| TraesCS7D01G203600.1 | Wheat | plastid | 28.33 | 24.93 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 26.67 | 24.69 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 11.67 | 24.65 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 26.0 | 24.38 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 28.33 | 24.29 |
| Os08t0193900-01 | Rice | nucleus | 32.0 | 24.24 |
| Zm00001d024764_P001 | Maize | cytosol | 28.67 | 24.09 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 28.33 | 24.08 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 28.33 | 24.01 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 25.67 | 23.99 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 22.33 | 23.84 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 25.0 | 23.58 |
| TraesCS6B01G310200.1 | Wheat | plastid | 28.33 | 23.55 |
| OQU80048 | Sorghum | cytosol | 22.33 | 23.51 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 26.0 | 23.28 |
| HORVU2Hr1G077990.2 | Barley | plastid | 29.0 | 23.26 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 26.67 | 23.26 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 26.67 | 23.26 |
| OQU80174 | Sorghum | cytosol | 10.33 | 23.13 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 9.0 | 22.88 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 16.0 | 22.54 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 25.67 | 22.32 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 25.33 | 22.29 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 32.0 | 22.22 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 25.67 | 22.13 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 23.67 | 21.52 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 21.67 | 21.45 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 33.33 | 21.28 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 27.67 | 20.96 |
| Os08t0193300-00 | Rice | cytosol | 22.67 | 20.42 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 18.0 | 20.0 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 15.67 | 19.34 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 19.33 | 19.21 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 27.67 | 18.95 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 28.0 | 18.88 |
| TraesCS6A01G051000.1 | Wheat | plastid | 23.33 | 18.82 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 29.33 | 18.8 |
| TraesCS3B01G452300.1 | Wheat | plastid | 29.0 | 18.71 |
| Os08t0191300-00 | Rice | cytosol, golgi | 16.0 | 18.68 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 30.0 | 18.15 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 18.0 | 18.06 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 15.0 | 18.0 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 28.33 | 17.93 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 28.0 | 17.76 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 23.0 | 17.65 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 19.67 | 15.9 |
| Os08t0196200-01 | Rice | cytosol | 8.67 | 9.49 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 1.33 | 1.06 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A078G9B9 | EnsemblPlants:CDY21986 | ProteinID:CDY21986 | ProteinID:CDY21986.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00018326001 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF5 | SMART:SM00256 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EDCDC6 | SEG:seg |
Description
BnaC09g00920DBnaC09g00920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9B9]
Coordinates
chrLK032126:+:507446..514651
Molecular Weight (calculated)
34377.2 Da
IEP (calculated)
4.912
GRAVY (calculated)
-0.273
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSSLIP VMKDRECRSW SELPYELTSS ILRRLDYTDI LVNAQRVCTS WRRVCKDPAM WRKIDMRDLG KFRYLVKTLY HRHILDLSQG GLVELDMWYI
101: GSDSLLDYIA DRSSNLRSLK LDLISMITTD GLTEALGKLP LLEELELSRY TLSGDSLRVV GQSCPKLKTL KLHSLKIRPP GYGYGYDDDA LAISETLHGL
201: RFLLLFGNCL TKVGLNAILD NCPDLEHLDL RLCFNFKLVG DLEKRCSERI KVLRRPFDSP ECPYDEREIH ADISDDEVPF VPDVNSYDIF ESDSDYSDSD
101: GSDSLLDYIA DRSSNLRSLK LDLISMITTD GLTEALGKLP LLEELELSRY TLSGDSLRVV GQSCPKLKTL KLHSLKIRPP GYGYGYDDDA LAISETLHGL
201: RFLLLFGNCL TKVGLNAILD NCPDLEHLDL RLCFNFKLVG DLEKRCSERI KVLRRPFDSP ECPYDEREIH ADISDDEVPF VPDVNSYDIF ESDSDYSDSD
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.