Factsheet for TraesCS3B01G452300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G412900.1	Wheat	cytosol, plastid	95.7	95.09
TraesCS3A01G417400.1	Wheat	cytosol	85.59	80.24
TraesCS3B01G452500.1	Wheat	cytosol	77.85	76.53
TraesCS3B01G452600.1	Wheat	extracellular	54.19	76.36
TraesCS3B01G452400.1	Wheat	cytosol	68.39	71.46
Os08t0193200-00	Rice	cytosol	17.63	71.3
KXG24670	Sorghum	cytosol	40.65	59.62
TraesCS5B01G466500.1	Wheat	extracellular	13.12	58.1
Os08t0193500-00	Rice	cytosol	26.67	56.62
Os08t0193300-00	Rice	cytosol	31.61	44.14
TraesCS5B01G484300.1	Wheat	cytosol	18.92	43.35
TraesCS5B01G484500.1	Wheat	cytosol	18.92	42.93
TraesCS5B01G081700.1	Wheat	cytosol	15.27	42.77
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	15.48	41.86
TraesCS3B01G443100.1	Wheat	cytosol	21.72	39.15
TraesCS5B01G484600.1	Wheat	cytosol	17.42	38.94
PGSC0003DMT400058969	Potato	cytosol	7.1	37.08
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	17.63	36.61
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	14.84	35.75
TraesCS2B01G178700.1	Wheat	plastid	23.44	35.28
TraesCS5B01G484100.1	Wheat	cytosol	16.77	34.82
TraesCS4B01G183700.1	Wheat	cytosol	21.51	33.9
TraesCS4B01G183800.1	Wheat	cytosol	22.15	33.66
TraesCS3B01G443800.1	Wheat	nucleus	24.95	33.62
TraesCS3B01G444000.1	Wheat	nucleus	25.16	33.43
CDY21988	Canola	cytosol	10.75	33.11
Bra034230.1-P	Field mustard	cytosol	18.71	33.08
CDY48578	Canola	cytosol	17.85	33.07
TraesCS5B01G284300.1	Wheat	cytosol	24.3	32.85
KRH21099	Soybean	cytosol	21.94	32.8
TraesCS7B01G480000.1	Wheat	cytosol	22.58	32.71
TraesCS7B01G205200.1	Wheat	mitochondrion	24.3	32.66
TraesCS7B01G098400.1	Wheat	cytosol	21.51	32.47
CDX73787	Canola	cytosol	17.85	32.42
CDY21989	Canola	cytosol	5.59	32.1
AT4G05460.1	Thale cress	cytosol	20.65	31.79
KRH11147	Soybean	cytosol	21.51	31.45
CDX99649	Canola	cytosol	15.7	31.33
CDY48580	Canola	cytosol	20.65	31.27
Bra030342.1-P	Field mustard	cytosol	15.48	30.9
TraesCS1B01G041200.1	Wheat	cytosol	21.72	30.61
Bra000817.1-P	Field mustard	plastid	11.83	30.56
Bra034227.1-P	Field mustard	plastid	20.86	30.5
Bra034231.1-P	Field mustard	cytosol, plastid	16.99	30.5
CDY15937	Canola	cytosol	15.27	30.47
Bra034229.1-P	Field mustard	cytosol	18.06	30.43
PGSC0003DMT400016134	Potato	cytosol	18.92	30.34
CDY48575	Canola	plastid	20.65	30.28
TraesCS2B01G085400.1	Wheat	cytosol	20.65	30.0
AT4G03630.1	Thale cress	cytosol	14.19	30.0
CDY48574	Canola	cytosol	19.14	29.87
PGSC0003DMT400052833	Potato	cytosol	17.63	29.82
TraesCS2B01G332200.1	Wheat	cytosol	20.0	29.71
TraesCS2B01G085200.1	Wheat	cytosol	20.65	29.63
CDY48576	Canola	cytosol	18.92	29.63
CDY21333	Canola	nucleus, plastid	18.71	29.59
CDX77948	Canola	cytosol	10.75	29.59
CDX90789	Canola	cytosol	19.14	29.57
Bra030690.1-P	Field mustard	cytosol	17.85	29.54
CDY15618	Canola	cytosol	17.85	29.54
Bra034226.1-P	Field mustard	cytosol	18.28	29.51
TraesCS7B01G287400.1	Wheat	cytosol	20.43	29.41
AT4G05490.1	Thale cress	plastid	19.35	29.32
AT5G52480.1	Thale cress	cytosol	15.05	29.05
CDY21986	Canola	cytosol, plastid	18.71	29.0
Bra034228.1-P	Field mustard	cytosol	18.49	28.96
Bra000816.1-P	Field mustard	plastid	20.22	28.92
CDX86473	Canola	cytosol	15.91	28.91
VIT_10s0003g04300.t01	Wine grape	cytosol	19.78	28.66
AT4G05497.1	Thale cress	plastid	15.05	28.46
CDY48577	Canola	cytosol	16.99	28.01
CDY62000	Canola	plastid	19.78	27.96
PGSC0003DMT400090939	Potato	cytosol	18.06	27.72
Solyc08g006940.2.1	Tomato	cytosol	18.49	27.65
AT4G05475.1	Thale cress	cytosol	18.06	27.18
PGSC0003DMT400015035	Potato	cytosol	17.85	27.12
CDY09910	Canola	nucleus	18.49	26.88
Solyc08g013800.2.1	Tomato	cytosol	16.99	26.87
TraesCS6B01G067700.1	Wheat	plastid	15.27	26.49
CDY59275	Canola	plastid	18.28	26.48
CDY06267	Canola	nucleus	19.78	26.44
CDY10283	Canola	cytosol	17.85	26.43
AT4G05470.1	Thale cress	cytosol, plastid	17.2	26.14
Bra031582.1-P	Field mustard	nucleus	19.57	26.0
Bra000723.1-P	Field mustard	cytosol	8.39	25.66
Solyc08g013780.1.1	Tomato	cytosol	6.67	25.2
PGSC0003DMT400015030	Potato	cytosol	15.7	24.66
TraesCS6B01G310200.1	Wheat	plastid	18.92	24.38
CDY21990	Canola	cytosol	9.89	23.96
TraesCS6B01G112100.1	Wheat	mitochondrion	17.63	23.43
TraesCS6B01G112000.1	Wheat	mitochondrion	17.2	23.19
PGSC0003DMT400054358	Potato	cytosol	16.56	22.71
Solyc08g013820.2.1	Tomato	cytosol	18.06	22.58
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	10.11	19.34
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	12.26	18.81
CDY21983	Canola	cytosol	11.18	18.37
Bra034194.1-P	Field mustard	cytosol	18.71	16.26
CDY22112	Canola	cytosol	16.77	16.18
CDY09154	Canola	plastid	18.28	14.99
Bra020205.1-P	Field mustard	plastid	18.28	14.99

Protein Annotations

EnsemblPlants:TraesCS3B01G452300.1	EnsemblPlantsGene:TraesCS3B01G452300	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
ncoils:Coil	PANTHER:PTHR44078	PFAM:PF12937	PFscan:PS50181	SEG:seg	SUPFAM:SSF52047
SUPFAM:SSF81383	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:693467539..693470296

Molecular Weight (calculated)

52579.4 Da

IEP (calculated)

4.503

GRAVY (calculated)

-0.452

Length

465 amino acids

Sequence
(BLAST)

001: MSNPPASPSG DVGSRISGSL AAGGSREERG AFLPIADIRR IMRKAIPPNG EIDEEAAQEL VPEARGDGCK RARPEAMAGD DLLPEMAKQG FQAYPHKNRV
101: ELPCTMEAEP NPLPVSDARD WSELPLDALS AIFMKLGTIE ILMGAGLVCR SWLVAAKSPE LWRFVDMTRH KLVFSKGGNV MYKMAKVAID RSDGRMESFW
201: AQKFVTSELL NYIASRCNSL KSIRLIGAYY FWDDEDVVIK LAAKCPMLEE IEYSGQKLTW DFFKGIGAAR PALKRLRVCL PWFDSDSIER EIRMEQRQND
301: EEEEEEEEEP YEAWEARHNE EAFAIAKSLH ELRLLQMAGY GLTKKGVYAI LEGCPHLEFL DLRECGHLLV DAELKARCAN IKHVRLPGAW PHAHCPELDT
401: IEEDEGEVIE MPNLYEIEAQ ALHNEAAMDN DDYGENYWDD YSLPSPPGSP VPTYSMDDPR YYWEL

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.