Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| EES04173 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | EES04173 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0193200-00 | Rice | cytosol | 24.92 | 68.7 |
| Os08t0193500-00 | Rice | cytosol | 38.17 | 55.25 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 55.84 | 50.86 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 50.79 | 48.79 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 60.88 | 41.24 |
| TraesCS3B01G452300.1 | Wheat | plastid | 59.62 | 40.65 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 60.25 | 40.38 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 55.52 | 40.18 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 59.94 | 40.08 |
| Os08t0193300-00 | Rice | cytosol | 41.64 | 39.64 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 55.52 | 39.55 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 47.0 | 38.11 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 59.31 | 37.9 |
| KXG24675 | Sorghum | cytosol | 32.49 | 35.76 |
| CDY21988 | Canola | cytosol | 16.72 | 35.1 |
| PGSC0003DMT400058969 | Potato | cytosol | 9.78 | 34.83 |
| CDX99649 | Canola | cytosol | 25.55 | 34.76 |
| CDY48578 | Canola | cytosol | 27.44 | 34.66 |
| Bra034230.1-P | Field mustard | cytosol | 28.71 | 34.6 |
| CDY15937 | Canola | cytosol | 25.24 | 34.33 |
| Bra030342.1-P | Field mustard | cytosol | 24.61 | 33.48 |
| OQU80174 | Sorghum | cytosol | 13.88 | 32.84 |
| CDX73787 | Canola | cytosol | 26.18 | 32.42 |
| Bra034227.1-P | Field mustard | plastid | 32.18 | 32.08 |
| CDY48575 | Canola | plastid | 31.86 | 31.86 |
| AT4G05497.1 | Thale cress | plastid | 24.61 | 31.71 |
| Bra000817.1-P | Field mustard | plastid | 17.98 | 31.67 |
| AT4G03630.1 | Thale cress | cytosol | 21.77 | 31.36 |
| CDY21333 | Canola | nucleus, plastid | 29.02 | 31.29 |
| PGSC0003DMT400052833 | Potato | cytosol | 26.81 | 30.91 |
| CDY21989 | Canola | cytosol | 7.89 | 30.86 |
| AT4G05460.1 | Thale cress | cytosol | 29.34 | 30.79 |
| CDX90789 | Canola | cytosol | 29.02 | 30.56 |
| Bra034229.1-P | Field mustard | cytosol | 26.5 | 30.43 |
| CDY48580 | Canola | cytosol | 29.34 | 30.29 |
| CDY48574 | Canola | cytosol | 28.39 | 30.2 |
| CDX77948 | Canola | cytosol | 16.09 | 30.18 |
| EES17669 | Sorghum | cytosol | 31.55 | 30.12 |
| CDX86473 | Canola | cytosol | 24.29 | 30.08 |
| PGSC0003DMT400016134 | Potato | cytosol | 27.44 | 30.0 |
| KRH21099 | Soybean | cytosol | 29.34 | 29.9 |
| Bra034226.1-P | Field mustard | cytosol | 27.13 | 29.86 |
| CDY48577 | Canola | cytosol | 26.5 | 29.79 |
| CDY15618 | Canola | cytosol | 26.18 | 29.54 |
| Bra030690.1-P | Field mustard | cytosol | 26.18 | 29.54 |
| AT4G05490.1 | Thale cress | plastid | 28.39 | 29.32 |
| CDY62000 | Canola | plastid | 30.28 | 29.18 |
| AT5G52480.1 | Thale cress | cytosol | 22.08 | 29.05 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 29.34 | 28.97 |
| KRH11147 | Soybean | cytosol | 29.02 | 28.93 |
| CDY21986 | Canola | cytosol, plastid | 27.13 | 28.67 |
| CDY48576 | Canola | cytosol | 26.81 | 28.62 |
| Bra000816.1-P | Field mustard | plastid | 29.02 | 28.31 |
| CDY09910 | Canola | nucleus | 28.39 | 28.12 |
| CDY10283 | Canola | cytosol | 27.76 | 28.03 |
| Bra034228.1-P | Field mustard | cytosol | 26.18 | 27.95 |
| EES14679 | Sorghum | nucleus | 30.28 | 27.91 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 26.5 | 27.45 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 22.4 | 27.41 |
| Solyc08g006940.2.1 | Tomato | cytosol | 26.81 | 27.33 |
| CDY59275 | Canola | plastid | 27.44 | 27.1 |
| PGSC0003DMT400090939 | Potato | cytosol | 25.87 | 27.06 |
| Solyc08g013800.2.1 | Tomato | cytosol | 24.92 | 26.87 |
| AT4G05475.1 | Thale cress | cytosol | 26.18 | 26.86 |
| Solyc08g013780.1.1 | Tomato | cytosol | 10.41 | 26.83 |
| CDY06267 | Canola | nucleus | 29.34 | 26.72 |
| Bra031582.1-P | Field mustard | nucleus | 29.02 | 26.29 |
| PGSC0003DMT400015035 | Potato | cytosol | 24.29 | 25.16 |
| PGSC0003DMT400015030 | Potato | cytosol | 23.03 | 24.66 |
| Bra000723.1-P | Field mustard | cytosol | 11.67 | 24.34 |
| OQU80176 | Sorghum | mitochondrion | 16.72 | 23.77 |
| PGSC0003DMT400054358 | Potato | cytosol | 25.24 | 23.6 |
| CDY21990 | Canola | cytosol | 14.2 | 23.44 |
| OQU80048 | Sorghum | cytosol | 20.82 | 23.16 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 32.18 | 21.7 |
| Solyc08g013820.2.1 | Tomato | cytosol | 24.29 | 20.7 |
| CDY21983 | Canola | cytosol | 17.03 | 19.08 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 16.72 | 17.49 |
| Bra034194.1-P | Field mustard | cytosol | 27.13 | 16.07 |
| CDY22112 | Canola | cytosol | 23.97 | 15.77 |
| Bra020205.1-P | Field mustard | plastid | 27.44 | 15.34 |
| CDY09154 | Canola | plastid | 27.44 | 15.34 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A1B6PG60 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | ProteinID:KXG24667.1 |
| ProteinID:KXG24668.1 | ProteinID:KXG24669.1 | EnsemblPlants:KXG24670 | ProteinID:KXG24670 | ProteinID:KXG24670.1 | InterPro:LRR_dom_sf |
| PFAM:PF12937 | PANTHER:PTHR44078 | EnsemblPlantsGene:SORBI_3007G070200 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0001C80CB0 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:-:7794343..7798998
Molecular Weight (calculated)
36541.1 Da
IEP (calculated)
4.889
GRAVY (calculated)
-0.202
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVDPSPLLE SPVRDWSELP LDPLSSIFMK LGAIEVLMGA GLVCRSWLAA AKAPEIWRFV DMTRHKLVFS KSTSILCAMA RVAIDRSDGR MESFWAQQFV
101: TDELLDYIGN RANYLKSIRL VSCAYFWHMP LVMMVDKCPL LEEIECSYQI MPEGFFRNLG IVCPQLKRLR INIEEWYDSD EIWREMKMEC RRQNGELDED
201: EESEEETAEA WEARINEVAF AIAESLPELR LLQLAGNSLT NKGLYAILKG CPHLECLDIS DYSNLHVNGE LRARCSNLKH VLFHKQQNKV CCPDLHVIGE
301: KEGEDYKAHY ALPFIKR
101: TDELLDYIGN RANYLKSIRL VSCAYFWHMP LVMMVDKCPL LEEIECSYQI MPEGFFRNLG IVCPQLKRLR INIEEWYDSD EIWREMKMEC RRQNGELDED
201: EESEEETAEA WEARINEVAF AIAESLPELR LLQLAGNSLT NKGLYAILKG CPHLECLDIS DYSNLHVNGE LRARCSNLKH VLFHKQQNKV CCPDLHVIGE
301: KEGEDYKAHY ALPFIKR
001: MTASSKMTSS TTLLSLFMKE DEEGRNKKTT TSTTLESLLM KERRNWVDLP PELTTSILLR LSLTDILDNA QKVCKEWRRI CKDPSMWRKI NTRDCLMYNF
101: DFVSMCRHIV DLSQGGLLEI NVDEHFLSDS LLSYITDRSR NLRSLGLGMC FPRVTKLGVV NAIAKIPLLE TLEVTHSCIK LDLKAIGHAC PQLKTLKLNS
201: LGRLWPASDK YDSNVLDDMG PLECDDDALA IAESMPKLHH LQLMANRLTN TGLNAILDGC PHLEHLDVRK CFRISLVGNL EKRCLEMIKE LRRPGDSTAD
301: YPYNGV
101: DFVSMCRHIV DLSQGGLLEI NVDEHFLSDS LLSYITDRSR NLRSLGLGMC FPRVTKLGVV NAIAKIPLLE TLEVTHSCIK LDLKAIGHAC PQLKTLKLNS
201: LGRLWPASDK YDSNVLDDMG PLECDDDALA IAESMPKLHH LQLMANRLTN TGLNAILDGC PHLEHLDVRK CFRISLVGNL EKRCLEMIKE LRRPGDSTAD
301: YPYNGV
Arabidopsis Description
RNI-like superfamily protein [Source:TAIR;Acc:AT4G05470]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.