Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77948 | Canola | cytosol | 56.95 | 50.89 |
| CDY48578 | Canola | cytosol | 76.82 | 46.22 |
| CDY21990 | Canola | cytosol | 58.28 | 45.83 |
| CDY48574 | Canola | cytosol | 74.17 | 37.58 |
| CDY48580 | Canola | cytosol | 73.51 | 36.16 |
| CDX99649 | Canola | cytosol | 54.97 | 35.62 |
| CDY15937 | Canola | cytosol | 54.97 | 35.62 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 23.84 | 34.29 |
| CDY48577 | Canola | cytosol | 62.91 | 33.69 |
| CDX90789 | Canola | cytosol | 66.23 | 33.22 |
| CDX73787 | Canola | cytosol | 56.29 | 33.2 |
| CDY48576 | Canola | cytosol | 64.9 | 33.0 |
| CDY15618 | Canola | cytosol | 60.26 | 32.38 |
| CDY21986 | Canola | cytosol, plastid | 63.58 | 32.0 |
| CDY59275 | Canola | plastid | 66.23 | 31.15 |
| CDY21333 | Canola | nucleus, plastid | 60.26 | 30.95 |
| CDY09910 | Canola | nucleus | 64.9 | 30.62 |
| CDY48575 | Canola | plastid | 63.58 | 30.28 |
| CDX86473 | Canola | cytosol | 50.99 | 30.08 |
| CDY62000 | Canola | plastid | 64.24 | 29.48 |
| CDY06267 | Canola | nucleus | 66.89 | 29.02 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 31.13 | 28.31 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 19.87 | 28.3 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 20.53 | 26.27 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 17.22 | 26.26 |
| Os11t0637300-00 | Rice | cytosol | 20.53 | 25.83 |
| CDY10283 | Canola | cytosol | 53.64 | 25.8 |
| Os08t0193200-00 | Rice | cytosol | 19.21 | 25.22 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 32.45 | 24.26 |
| PGSC0003DMT400016134 | Potato | cytosol | 46.36 | 24.14 |
| Os08t0193500-00 | Rice | cytosol | 34.44 | 23.74 |
| PGSC0003DMT400052833 | Potato | cytosol | 43.05 | 23.64 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 31.13 | 23.15 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 31.13 | 23.15 |
| OQU80174 | Sorghum | cytosol | 20.53 | 23.13 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 49.01 | 23.05 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 31.13 | 22.93 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 30.46 | 22.66 |
| PGSC0003DMT400015035 | Potato | cytosol | 45.7 | 22.55 |
| Solyc08g013800.2.1 | Tomato | cytosol | 43.71 | 22.45 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 25.17 | 22.09 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 25.17 | 22.09 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 20.53 | 21.83 |
| PGSC0003DMT400015030 | Potato | cytosol | 42.38 | 21.62 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 31.13 | 20.98 |
| PGSC0003DMT400054358 | Potato | cytosol | 46.36 | 20.65 |
| CDY22112 | Canola | cytosol | 65.56 | 20.54 |
| KRH21099 | Soybean | cytosol | 41.72 | 20.26 |
| KRH11147 | Soybean | cytosol | 42.38 | 20.13 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 35.1 | 19.85 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 27.15 | 19.71 |
| Zm00001d024252_P001 | Maize | cytosol | 34.44 | 19.7 |
| PGSC0003DMT400090939 | Potato | cytosol | 39.07 | 19.47 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 33.11 | 19.38 |
| Solyc08g006940.2.1 | Tomato | cytosol | 39.74 | 19.29 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 31.79 | 19.2 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 37.75 | 18.45 |
| TraesCS2B01G178700.1 | Wheat | plastid | 37.75 | 18.45 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 27.15 | 18.3 |
| KXG24675 | Sorghum | cytosol | 34.44 | 18.06 |
| Solyc08g013820.2.1 | Tomato | cytosol | 44.37 | 18.01 |
| TraesCS2D01G159000.1 | Wheat | plastid | 36.42 | 17.8 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 33.77 | 17.53 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 33.11 | 17.18 |
| TraesCS6B01G067700.1 | Wheat | plastid | 30.46 | 17.16 |
| CDY09154 | Canola | plastid | 64.24 | 17.11 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 37.09 | 17.07 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 33.77 | 16.89 |
| KXG24670 | Sorghum | cytosol | 35.1 | 16.72 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 35.76 | 16.46 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 35.76 | 16.36 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 32.45 | 16.01 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 36.42 | 15.94 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 33.77 | 15.74 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 33.77 | 15.74 |
| EES14679 | Sorghum | nucleus | 35.76 | 15.7 |
| Zm00001d024265_P001 | Maize | cytosol | 31.13 | 15.67 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 35.76 | 15.61 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 35.76 | 15.61 |
| Zm00001d010914_P001 | Maize | cytosol | 33.77 | 15.6 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 31.79 | 15.58 |
| Os02t0317300-01 | Rice | cytosol | 33.77 | 15.55 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 35.76 | 15.43 |
| Os08t0194350-00 | Rice | cytosol | 27.15 | 15.41 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 31.13 | 15.36 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 31.13 | 15.36 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 29.8 | 15.25 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 30.46 | 15.23 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 31.79 | 15.19 |
| Os02t0317500-01 | Rice | cytosol | 33.11 | 15.15 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 35.1 | 15.14 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 35.1 | 15.14 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 19.21 | 15.03 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 31.79 | 15.0 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 31.79 | 14.95 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 30.46 | 14.94 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 31.79 | 14.81 |
| EES17669 | Sorghum | cytosol | 32.45 | 14.76 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 34.44 | 14.73 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 34.44 | 14.69 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 29.14 | 14.62 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 33.11 | 14.53 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 29.8 | 14.52 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 33.11 | 14.49 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 32.45 | 14.45 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 33.11 | 14.29 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 31.79 | 14.08 |
| TraesCS7D01G203600.1 | Wheat | plastid | 31.79 | 14.08 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 31.13 | 14.03 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 31.79 | 13.95 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 31.13 | 13.86 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 31.13 | 13.78 |
| Os08t0193900-01 | Rice | nucleus | 35.76 | 13.64 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 29.14 | 13.62 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 31.13 | 13.58 |
| TraesCS7D01G203500.1 | Wheat | plastid | 29.8 | 13.24 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 33.77 | 13.04 |
| Zm00001d046526_P001 | Maize | plastid | 23.84 | 12.72 |
| TraesCS6A01G051000.1 | Wheat | plastid | 31.13 | 12.63 |
| Zm00001d024764_P001 | Maize | cytosol | 29.8 | 12.61 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 26.49 | 12.58 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 25.83 | 12.54 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 25.83 | 12.46 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 27.15 | 12.42 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 28.48 | 12.36 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 25.17 | 12.14 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 29.8 | 12.13 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 18.54 | 12.02 |
| TraesCS6B01G310200.1 | Wheat | plastid | 28.48 | 11.91 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 33.77 | 11.64 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 33.11 | 11.57 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 33.77 | 11.46 |
| Os08t0193300-00 | Rice | cytosol | 25.17 | 11.41 |
| OQU80048 | Sorghum | cytosol | 21.19 | 11.23 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 29.14 | 11.11 |
| HORVU2Hr1G077990.2 | Barley | plastid | 27.15 | 10.96 |
| Os08t0196200-01 | Rice | cytosol | 19.87 | 10.95 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 33.77 | 10.85 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 15.89 | 10.81 |
| TraesCS3B01G452300.1 | Wheat | plastid | 33.11 | 10.75 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 17.22 | 10.7 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 33.11 | 10.68 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 33.11 | 10.57 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 33.11 | 10.55 |
| Os08t0191300-00 | Rice | cytosol, golgi | 16.56 | 9.73 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 31.79 | 9.68 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 17.22 | 9.63 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 13.24 | 9.39 |
| OQU80176 | Sorghum | mitochondrion | 13.24 | 8.97 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 17.88 | 8.91 |
| CDY21983 | Canola | cytosol | 15.23 | 8.13 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 14.57 | 7.83 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 13.91 | 7.02 |
| PGSC0003DMT400058969 | Potato | cytosol | 2.65 | 4.49 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.66 | 0.26 |
| CDY21989 | Canola | cytosol | 0.0 | 0.0 |
| Solyc08g013780.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | UniProt:A0A078GBC9 | EnsemblPlants:CDY21988 | ProteinID:CDY21988 |
| ProteinID:CDY21988.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00018329001 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF12937 | PFscan:PS50181 |
| PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 | SMART:SM00256 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0004EE018E |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g00940DBnaC09g00940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBC9]
Coordinates
chrLK032126:+:519854..520385
Molecular Weight (calculated)
17576.4 Da
IEP (calculated)
7.814
GRAVY (calculated)
-0.226
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEGECIKWA ELPYELTSSI LRRLSSIDIL ENAQRVCRSW RHVCKDPEMW RKIDMRNLVD VGYTLEIMCR HAVDRSQRGL VEINIWHFAT DSLLNHIAER
101: SSNLRSLRLV MCSRITNDGL AKALAKLPLL EELEFSYCPL SVESLRLSDR S
101: SSNLRSLRLV MCSRITNDGL AKALAKLPLL EELEFSYCPL SVESLRLSDR S
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.