Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Os01t0935300-02 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | Os05t0193900-00 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G020540.2 | Barley | cytosol | 41.16 | 58.01 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 46.97 | 53.76 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 55.56 | 50.93 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 53.54 | 45.11 |
| CDY21989 | Canola | cytosol | 8.33 | 40.74 |
| Bra000817.1-P | Field mustard | plastid | 17.93 | 39.44 |
| Os02t0317300-01 | Rice | cytosol | 32.32 | 39.02 |
| Os08t0194350-00 | Rice | cytosol | 26.01 | 38.72 |
| Os02t0317500-01 | Rice | cytosol | 31.31 | 37.58 |
| Os08t0193200-00 | Rice | cytosol | 10.86 | 37.39 |
| CDY48578 | Canola | cytosol | 22.98 | 36.26 |
| CDY48580 | Canola | cytosol | 28.03 | 36.16 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 29.29 | 36.14 |
| Bra034230.1-P | Field mustard | cytosol | 23.99 | 36.12 |
| KRH21099 | Soybean | cytosol | 28.28 | 36.01 |
| CDY21988 | Canola | cytosol | 13.64 | 35.76 |
| AT4G05460.1 | Thale cress | cytosol | 27.27 | 35.76 |
| Bra030342.1-P | Field mustard | cytosol | 20.71 | 35.19 |
| CDY15937 | Canola | cytosol | 20.71 | 35.19 |
| CDX99649 | Canola | cytosol | 20.71 | 35.19 |
| AT4G03630.1 | Thale cress | cytosol | 19.44 | 35.0 |
| Os11t0637300-00 | Rice | cytosol | 10.61 | 35.0 |
| PGSC0003DMT400058969 | Potato | cytosol | 7.83 | 34.83 |
| CDX86473 | Canola | cytosol | 22.22 | 34.38 |
| CDY21333 | Canola | nucleus, plastid | 25.51 | 34.35 |
| KRH11147 | Soybean | cytosol | 27.53 | 34.28 |
| Bra034227.1-P | Field mustard | plastid | 27.53 | 34.28 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 22.22 | 33.98 |
| CDY48575 | Canola | plastid | 27.02 | 33.75 |
| CDY48576 | Canola | cytosol | 25.25 | 33.67 |
| CDY15618 | Canola | cytosol | 23.74 | 33.45 |
| Bra030690.1-P | Field mustard | cytosol | 23.74 | 33.45 |
| Bra034226.1-P | Field mustard | cytosol | 24.24 | 33.33 |
| AT4G05490.1 | Thale cress | plastid | 25.76 | 33.22 |
| CDX90789 | Canola | cytosol | 25.25 | 33.22 |
| CDX73787 | Canola | cytosol | 21.46 | 33.2 |
| Bra034228.1-P | Field mustard | cytosol | 24.75 | 33.0 |
| Bra034229.1-P | Field mustard | cytosol | 22.98 | 32.97 |
| CDY48574 | Canola | cytosol | 24.49 | 32.55 |
| PGSC0003DMT400016134 | Potato | cytosol | 23.74 | 32.41 |
| PGSC0003DMT400052833 | Potato | cytosol | 22.47 | 32.36 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 24.49 | 32.12 |
| PGSC0003DMT400090939 | Potato | cytosol | 24.49 | 32.01 |
| CDY21986 | Canola | cytosol, plastid | 24.24 | 32.0 |
| Solyc08g006940.2.1 | Tomato | cytosol | 25.0 | 31.83 |
| CDY59275 | Canola | plastid | 25.51 | 31.46 |
| PGSC0003DMT400015035 | Potato | cytosol | 24.24 | 31.37 |
| CDX77948 | Canola | cytosol | 13.38 | 31.36 |
| Solyc08g013800.2.1 | Tomato | cytosol | 23.23 | 31.29 |
| Os08t0193500-00 | Rice | cytosol | 17.17 | 31.05 |
| Bra000723.1-P | Field mustard | cytosol | 11.87 | 30.92 |
| AT4G05497.1 | Thale cress | plastid | 19.19 | 30.89 |
| Solyc08g013780.1.1 | Tomato | cytosol | 9.6 | 30.89 |
| Bra000816.1-P | Field mustard | plastid | 25.25 | 30.77 |
| CDY62000 | Canola | plastid | 25.51 | 30.7 |
| CDY10283 | Canola | cytosol | 24.24 | 30.57 |
| CDY48577 | Canola | cytosol | 21.72 | 30.5 |
| AT4G05475.1 | Thale cress | cytosol | 23.48 | 30.1 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 22.98 | 29.74 |
| CDY09910 | Canola | nucleus | 23.99 | 29.69 |
| AT5G52480.1 | Thale cress | cytosol | 17.68 | 29.05 |
| CDY06267 | Canola | nucleus | 25.0 | 28.45 |
| Bra031582.1-P | Field mustard | nucleus | 24.75 | 28.0 |
| PGSC0003DMT400015030 | Potato | cytosol | 20.45 | 27.36 |
| PGSC0003DMT400054358 | Potato | cytosol | 23.23 | 27.14 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 16.16 | 25.6 |
| CDY21990 | Canola | cytosol | 12.37 | 25.52 |
| Solyc08g013820.2.1 | Tomato | cytosol | 23.74 | 25.27 |
| Os08t0191300-00 | Rice | cytosol, golgi | 15.91 | 24.51 |
| CDY21983 | Canola | cytosol | 17.42 | 24.38 |
| Os08t0193300-00 | Rice | cytosol | 19.19 | 22.82 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 16.41 | 21.45 |
| Bra034194.1-P | Field mustard | cytosol | 25.76 | 19.07 |
| Os08t0196200-01 | Rice | cytosol | 12.63 | 18.25 |
| CDY09154 | Canola | plastid | 25.51 | 17.81 |
| Bra020205.1-P | Field mustard | plastid | 25.51 | 17.81 |
| CDY22112 | Canola | cytosol | 20.71 | 17.01 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 4.04 | 4.23 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:4344869 | EMBL:AK107386 | ProteinID:BAD05616.1 |
| ProteinID:BAF23096.1 | ProteinID:BAT04199.1 | ProteinID:EAZ41792.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | EnsemblPlantsGene:Os08g0193900 |
| EnsemblPlants:Os08t0193900-01 | PFAM:PF12937 | PFscan:PS50181 | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF3 | UniProt:Q6Z1A9 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000022F2AF | RefSeq:XP_015649426.1 | SEG:seg | : |
Description
F-box protein 413Cyclin-like F-box domain containing protein. (Os08t0193900-01)
Coordinates
chr8:-:5474996..5477814
Molecular Weight (calculated)
45104.2 Da
IEP (calculated)
6.728
GRAVY (calculated)
-0.609
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSAASRRR RHRHRHAGKP DYPPSELPDI LRVRELRLAP RASSLPNPNP HKPQPHPTIP SSTTTTTSGR RRNRRGRGRG RGRKEGDARD WAGGLPLDAI
101: LAIFHKLDHI EILMGAGQVC RSWRRAARDE PQLWRRIDMR GHADLSFELN LFGMAQAAVR RSAGQCEAFW GEYAADEKLL HFLGERAPSV KSLRLISCYD
201: ILNEGFSAAI KKFPLLEELE LSLCSNIGES NVFEIVGKAC PQLKRFRFSK DCFYSFEDNE YEMDEEALGI ATMHELRSLQ LFANNLRNEG LAAILDNCPY
301: LESLDIRHCF NVNMDDTLRA KCARIKTLRL PYDSTDDYDF QVQKPISLAD FYSDSDDDCV YGGPDYILDS DEYDDYCDPY RYLDGVYEGV ASGRAR
101: LAIFHKLDHI EILMGAGQVC RSWRRAARDE PQLWRRIDMR GHADLSFELN LFGMAQAAVR RSAGQCEAFW GEYAADEKLL HFLGERAPSV KSLRLISCYD
201: ILNEGFSAAI KKFPLLEELE LSLCSNIGES NVFEIVGKAC PQLKRFRFSK DCFYSFEDNE YEMDEEALGI ATMHELRSLQ LFANNLRNEG LAAILDNCPY
301: LESLDIRHCF NVNMDDTLRA KCARIKTLRL PYDSTDDYDF QVQKPISLAD FYSDSDDDCV YGGPDYILDS DEYDDYCDPY RYLDGVYEGV ASGRAR
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.