Subcellular Localization
min:
: max
Winner_takes_all: cytosol, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Os01t0935300-02 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | Os05t0193900-00 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0637300-00 | Rice | cytosol | 24.0 | 50.0 |
| Os08t0193200-00 | Rice | cytosol | 22.8 | 49.57 |
| Os08t0193500-00 | Rice | cytosol | 28.0 | 31.96 |
| CDY21988 | Canola | cytosol | 19.2 | 31.79 |
| KXG24675 | Sorghum | cytosol | 33.2 | 28.82 |
| Zm00001d024252_P001 | Maize | cytosol | 28.8 | 27.27 |
| TraesCS2B01G178700.1 | Wheat | plastid | 33.2 | 26.86 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 33.2 | 26.86 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 31.2 | 26.8 |
| TraesCS2D01G159000.1 | Wheat | plastid | 32.8 | 26.54 |
| Os08t0194350-00 | Rice | cytosol | 28.0 | 26.32 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 31.6 | 26.16 |
| CDX77948 | Canola | cytosol | 17.2 | 25.44 |
| CDY21990 | Canola | cytosol | 16.0 | 20.83 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 24.8 | 20.53 |
| AT4G05497.1 | Thale cress | plastid | 19.2 | 19.51 |
| CDX99649 | Canola | cytosol | 17.6 | 18.88 |
| CDY21333 | Canola | nucleus, plastid | 22.0 | 18.71 |
| Os02t0317300-01 | Rice | cytosol | 24.4 | 18.6 |
| Bra034230.1-P | Field mustard | cytosol | 19.2 | 18.25 |
| CDY15937 | Canola | cytosol | 16.8 | 18.03 |
| CDY15618 | Canola | cytosol | 20.0 | 17.79 |
| Bra030690.1-P | Field mustard | cytosol | 20.0 | 17.79 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 22.8 | 17.76 |
| Bra034226.1-P | Field mustard | cytosol | 20.4 | 17.71 |
| Bra030342.1-P | Field mustard | cytosol | 16.4 | 17.6 |
| AT4G05460.1 | Thale cress | cytosol | 21.2 | 17.55 |
| CDY48578 | Canola | cytosol | 17.6 | 17.53 |
| CDY48577 | Canola | cytosol | 19.6 | 17.38 |
| CDY62000 | Canola | plastid | 22.8 | 17.33 |
| Os02t0317500-01 | Rice | cytosol | 22.8 | 17.27 |
| PGSC0003DMT400016134 | Potato | cytosol | 20.0 | 17.24 |
| CDX86473 | Canola | cytosol | 17.6 | 17.19 |
| PGSC0003DMT400052833 | Potato | cytosol | 18.8 | 17.09 |
| Bra034229.1-P | Field mustard | cytosol | 18.8 | 17.03 |
| Bra034227.1-P | Field mustard | plastid | 21.6 | 16.98 |
| CDY48580 | Canola | cytosol | 20.8 | 16.94 |
| CDX73787 | Canola | cytosol | 17.2 | 16.8 |
| CDY48575 | Canola | plastid | 21.2 | 16.72 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 22.8 | 16.47 |
| CDY48574 | Canola | cytosol | 19.6 | 16.44 |
| CDX90789 | Canola | cytosol | 19.6 | 16.28 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 16.8 | 16.22 |
| Os08t0193900-01 | Rice | nucleus | 25.6 | 16.16 |
| Solyc08g006940.2.1 | Tomato | cytosol | 20.0 | 16.08 |
| PGSC0003DMT400090939 | Potato | cytosol | 19.2 | 15.84 |
| Bra000816.1-P | Field mustard | plastid | 20.4 | 15.69 |
| CDY59275 | Canola | plastid | 19.6 | 15.26 |
| CDY21986 | Canola | cytosol, plastid | 18.0 | 15.0 |
| CDY09910 | Canola | nucleus | 19.2 | 15.0 |
| AT4G05490.1 | Thale cress | plastid | 18.4 | 14.98 |
| CDY10283 | Canola | cytosol | 18.8 | 14.97 |
| CDY06267 | Canola | nucleus | 20.8 | 14.94 |
| CDY48576 | Canola | cytosol | 17.6 | 14.81 |
| KRH21099 | Soybean | cytosol | 18.4 | 14.79 |
| Bra031582.1-P | Field mustard | nucleus | 20.4 | 14.57 |
| AT4G03630.1 | Thale cress | cytosol | 12.8 | 14.55 |
| Bra034228.1-P | Field mustard | cytosol | 17.2 | 14.48 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 17.6 | 14.38 |
| KRH11147 | Soybean | cytosol | 18.0 | 14.15 |
| PGSC0003DMT400015035 | Potato | cytosol | 17.2 | 14.05 |
| Solyc08g013800.2.1 | Tomato | cytosol | 16.0 | 13.61 |
| PGSC0003DMT400054358 | Potato | cytosol | 18.0 | 13.27 |
| AT4G05475.1 | Thale cress | cytosol | 15.6 | 12.62 |
| PGSC0003DMT400015030 | Potato | cytosol | 14.4 | 12.16 |
| Os08t0193300-00 | Rice | cytosol | 15.6 | 11.71 |
| Os08t0196200-01 | Rice | cytosol | 12.4 | 11.31 |
| Solyc08g013820.2.1 | Tomato | cytosol | 16.4 | 11.02 |
| Os08t0191300-00 | Rice | cytosol, golgi | 10.8 | 10.51 |
| Bra000817.1-P | Field mustard | plastid | 7.2 | 10.0 |
| CDY22112 | Canola | cytosol | 19.2 | 9.96 |
| AT5G52480.1 | Thale cress | cytosol | 9.6 | 9.96 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 11.2 | 9.24 |
| Bra034194.1-P | Field mustard | cytosol | 19.6 | 9.16 |
| Bra020205.1-P | Field mustard | plastid | 19.2 | 8.47 |
| CDY09154 | Canola | plastid | 19.2 | 8.47 |
| Bra000723.1-P | Field mustard | cytosol | 4.0 | 6.58 |
| CDY21983 | Canola | cytosol | 4.4 | 3.89 |
| PGSC0003DMT400058969 | Potato | cytosol | 0.4 | 1.12 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.8 | 0.53 |
| CDY21989 | Canola | cytosol | 0.0 | 0.0 |
| Solyc08g013780.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os08t0195000-00 | EnsemblPlantsGene:Os08g0195000 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:IPR032675 | InterPro:LRR_dom_sf | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF5 |
| ProteinID:BAT04207.1 | SEG:seg | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI0003939006 | UniProt:A0A0P0XCS9 |
| MapMan:35.1 | : | : | : | : | : |
Description
F-box protein 416F-box domain, Skp2-like domain containing protein. (Os08t0195000-00)
Coordinates
chr8:+:5551365..5553193
Molecular Weight (calculated)
27932.5 Da
IEP (calculated)
7.166
GRAVY (calculated)
0.216
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MESMLLPPES RDWSELPMDA FSVIFAKLGA IELLMGAGLV CHSWLHAAKL PHLWQCVEMV HHEALSLKEP IVMSEMARAA VDRSDGRLEA FEGQWFVNDG
101: LLNYIRDRSP KLKRLCLVSC YSVYKEAFIE FIAKCPLIED IALINCGSVV FHALNVITGK SFPQLKRFEL RTAFERPCYG CDVPLGIPTV RHLQHLILGG
201: IIDIDNEEPP ALTLILLASG SAMSSRSSML RTLRAKCAKI KIRTEASLLP
101: LLNYIRDRSP KLKRLCLVSC YSVYKEAFIE FIAKCPLIED IALINCGSVV FHALNVITGK SFPQLKRFEL RTAFERPCYG CDVPLGIPTV RHLQHLILGG
201: IIDIDNEEPP ALTLILLASG SAMSSRSSML RTLRAKCAKI KIRTEASLLP
001: MSSSSSSPFP QAMKNGEYRN WAELPPELTS SILLRLGAIE ILQNAQRVCK SWRRVCQDPS MWRKIDIRIK ENLVNSVELF YVIEPLCCRA VDLSQGGLLE
101: INIDYLVNTS FLNYIADRSS NLRRLGVVDC APVLSRGVVE AAMKLPLLEE LDITYKSSIR EQELKVVGQS CPNLRTLKLN CTGDVKCCDK VALAIAETMP
201: GLRHLQLFRN GLSETGLNAI LEGCPHLKNL GLHQCLNINI VGDIVK
101: INIDYLVNTS FLNYIADRSS NLRRLGVVDC APVLSRGVVE AAMKLPLLEE LDITYKSSIR EQELKVVGQS CPNLRTLKLN CTGDVKCCDK VALAIAETMP
201: GLRHLQLFRN GLSETGLNAI LEGCPHLKNL GLHQCLNINI VGDIVK
Arabidopsis Description
FBL9Putative F-box/LRR-repeat protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9V8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.