Factsheet for PGSC0003DMT400058969

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	PGSC0003DMT400063662	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21989	Canola	cytosol	31.46	34.57
Bra000723.1-P	Field mustard	cytosol	34.83	20.39
Bra000817.1-P	Field mustard	plastid	37.08	18.33
AT4G03630.1	Thale cress	cytosol	39.33	15.91
AT5G52480.1	Thale cress	cytosol	42.7	15.77
CDY48578	Canola	cytosol	42.7	15.14
PGSC0003DMT400016134	Potato	cytosol	47.19	14.48
Bra034230.1-P	Field mustard	cytosol	42.7	14.45
PGSC0003DMT400052833	Potato	cytosol	42.7	13.82
CDX99649	Canola	cytosol	35.96	13.73
CDX73787	Canola	cytosol	39.33	13.67
CDX86473	Canola	cytosol	39.33	13.67
PGSC0003DMT400015030	Potato	cytosol	44.94	13.51
PGSC0003DMT400015035	Potato	cytosol	46.07	13.4
Bra030342.1-P	Field mustard	cytosol	34.83	13.3
PGSC0003DMT400090939	Potato	cytosol	44.94	13.2
Bra034226.1-P	Field mustard	cytosol	42.7	13.19
Bra030690.1-P	Field mustard	cytosol	41.57	13.17
CDY15618	Canola	cytosol	41.57	13.17
AT4G05460.1	Thale cress	cytosol	43.82	12.91
CDY15937	Canola	cytosol	33.71	12.88
CDY21983	Canola	cytosol	40.45	12.72
AT4G05490.1	Thale cress	plastid	43.82	12.7
KRH21099	Soybean	cytosol	43.82	12.54
VIT_10s0003g04300.t01	Wine grape	cytosol	44.94	12.46
CDY48574	Canola	cytosol	41.57	12.42
KRH11147	Soybean	cytosol	43.82	12.26
CDY09910	Canola	nucleus	43.82	12.19
OQU80176	Sorghum	mitochondrion	30.34	12.11
TraesCS1A01G128000.1	Wheat	cytosol	31.46	12.02
AT4G05475.1	Thale cress	cytosol	41.57	11.97
CDX90789	Canola	cytosol	40.45	11.96
Bra034227.1-P	Field mustard	plastid	42.7	11.95
AT4G05470.1	Thale cress	cytosol, plastid	40.45	11.76
HORVU1Hr1G004970.3	Barley	cytosol	42.7	11.73
Bra000816.1-P	Field mustard	plastid	42.7	11.69
CDY48575	Canola	plastid	41.57	11.67
Bra034229.1-P	Field mustard	cytosol	35.96	11.59
CDY21333	Canola	nucleus, plastid	38.2	11.56
TraesCS4B01G183700.1	Wheat	cytosol	38.2	11.53
CDY10283	Canola	cytosol	40.45	11.46
CDY48580	Canola	cytosol	39.33	11.4
CDY21986	Canola	cytosol, plastid	38.2	11.33
TraesCS1A01G033100.1	Wheat	cytosol	41.57	11.28
CDY06267	Canola	nucleus	43.82	11.21
Bra031582.1-P	Field mustard	nucleus	43.82	11.14
Bra034228.1-P	Field mustard	cytosol	37.08	11.11
CDY48576	Canola	cytosol	37.08	11.11
TraesCS4B01G183800.1	Wheat	cytosol	38.2	11.11
TraesCS5D01G088900.1	Wheat	cytosol	38.2	11.11
TraesCS7B01G098400.1	Wheat	cytosol	38.2	11.04
AT4G05497.1	Thale cress	plastid	30.34	10.98
Os02t0317300-01	Rice	cytosol	40.45	10.98
TraesCS1D01G034100.1	Wheat	cytosol	40.45	10.98
CDY62000	Canola	plastid	40.45	10.94
PGSC0003DMT400054358	Potato	cytosol	41.57	10.91
TraesCS1B01G041200.1	Wheat	cytosol	40.45	10.91
CDY59275	Canola	plastid	39.33	10.9
EES17669	Sorghum	cytosol	40.45	10.84
Bra034231.1-P	Field mustard	cytosol, plastid	31.46	10.81
TraesCS5A01G075400.1	Wheat	cytosol	37.08	10.78
TraesCS7A01G193100.1	Wheat	cytosol	37.08	10.71
HORVU0Hr1G019800.1	Barley	cytosol	37.08	10.65
OQU80048	Sorghum	cytosol	33.71	10.53
Zm00001d010914_P001	Maize	cytosol	38.2	10.4
HORVU6Hr1G014660.1	Barley	cytosol	24.72	10.33
TraesCS2B01G085400.1	Wheat	cytosol	37.08	10.31
Os02t0317500-01	Rice	cytosol	38.2	10.3
CDY48577	Canola	cytosol	32.58	10.28
TraesCS2D01G070200.1	Wheat	cytosol	37.08	10.19
TraesCS7D01G194400.1	Wheat	extracellular	35.96	10.13
HORVU5Hr1G020150.1	Barley	mitochondrion	38.2	10.03
TraesCS7D01G194300.1	Wheat	cytosol	33.71	9.97
HORVU2Hr1G020540.2	Barley	cytosol	31.46	9.96
KXG24670	Sorghum	cytosol	34.83	9.78
TraesCS2A01G313400.1	Wheat	cytosol	33.71	9.65
TraesCS2B01G332200.1	Wheat	cytosol	33.71	9.58
TraesCS2D01G311900.1	Wheat	cytosol	33.71	9.58
TraesCS2B01G085200.1	Wheat	cytosol	34.83	9.57
TraesCS3D01G413100.1	Wheat	cytosol, endoplasmic reticulum, vacuole	37.08	9.48
Zm00001d024252_P001	Maize	cytosol	28.09	9.47
TraesCS3B01G452600.1	Wheat	extracellular	34.83	9.39
TraesCS7A01G304900.1	Wheat	mitochondrion, nucleus	28.09	9.36
TraesCS7B01G287400.1	Wheat	cytosol	33.71	9.29
TraesCS5B01G484500.1	Wheat	cytosol	21.35	9.27
HORVU6Hr1G070690.2	Barley	extracellular, mitochondrion, plasma membrane	30.34	9.03
Zm00001d024265_P001	Maize	cytosol	30.34	9.0
Zm00001d024764_P001	Maize	cytosol	35.96	8.96
Os08t0195800-00	Rice	cytosol, mitochondrion, nucleus	34.83	8.96
TraesCS1D01G126200.1	Wheat	nucleus	29.21	8.93
TraesCS3B01G443100.1	Wheat	cytosol	25.84	8.91
TraesCS5D01G468200.1	Wheat	cytosol, plasma membrane, plastid	20.22	8.91
TraesCS5A01G471800.1	Wheat	cytosol	20.22	8.87
KXG24675	Sorghum	cytosol	28.09	8.68
TraesCS5B01G484600.1	Wheat	cytosol	20.22	8.65
HORVU2Hr1G027710.1	Barley	cytosol	28.09	8.59
TraesCS3A01G410700.1	Wheat	mitochondrion	33.71	8.57
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	21.35	8.56
TraesCS3A01G411000.1	Wheat	nucleus	32.58	8.55
TraesCS7D01G381100.1	Wheat	mitochondrion	32.58	8.5
EES14679	Sorghum	nucleus	32.58	8.43
Os08t0193300-00	Rice	cytosol	31.46	8.41
TraesCS3B01G443800.1	Wheat	nucleus	32.58	8.41
TraesCS5B01G484300.1	Wheat	cytosol	19.1	8.37
TraesCS5D01G484300.1	Wheat	cytosol	19.1	8.37
TraesCS3B01G444000.1	Wheat	nucleus	32.58	8.29
HORVU2Hr1G027770.2	Barley	mitochondrion	28.09	8.28
Os08t0194350-00	Rice	cytosol	24.72	8.27
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	15.73	8.14
TraesCS5D01G100900.1	Wheat	endoplasmic reticulum	15.73	8.14
TraesCS7D01G300400.1	Wheat	mitochondrion, nucleus	31.46	8.09
TraesCS3D01G405300.1	Wheat	nucleus	31.46	8.0
TraesCS2D01G011000.1	Wheat	cytosol	28.09	7.86
Os08t0193900-01	Rice	nucleus	34.83	7.83
TraesCS7B01G205200.1	Wheat	mitochondrion	30.34	7.8
Os08t0191300-00	Rice	cytosol, golgi	22.47	7.78
TraesCS2A01G153600.1	Wheat	cytosol, plastid	26.97	7.77
TraesCS2D01G159000.1	Wheat	plastid	26.97	7.77
HORVU2Hr1G077990.2	Barley	plastid	32.58	7.75
TraesCS3B01G452400.1	Wheat	cytosol	38.2	7.64
TraesCS3D01G413000.1	Wheat	cytosol	37.08	7.53
TraesCS2B01G178700.1	Wheat	plastid	25.84	7.44
HORVU3Hr1G092720.1	Barley	cytosol, mitochondrion, nucleus	38.2	7.17
TraesCS3B01G452300.1	Wheat	plastid	37.08	7.1
TraesCS6A01G090000.1	Wheat	mitochondrion	28.09	7.08
TraesCSU01G016500.1	Wheat	mitochondrion	28.09	7.06
TraesCS3D01G412900.1	Wheat	cytosol, plastid	37.08	7.05
TraesCS7D01G203600.1	Wheat	plastid	26.97	7.04
TraesCS3B01G452500.1	Wheat	cytosol	37.08	6.98
TraesCS6B01G310200.1	Wheat	plastid	28.09	6.93
TraesCS7D01G203500.1	Wheat	plastid	25.84	6.76
Bra034194.1-P	Field mustard	cytosol	40.45	6.73
TraesCS5B01G484100.1	Wheat	cytosol	16.85	6.7
TraesCS6B01G112100.1	Wheat	mitochondrion	25.84	6.57
TraesCS7B01G480000.1	Wheat	cytosol	23.6	6.54
TraesCS2A01G119000.1	Wheat	nucleus	31.46	6.48
TraesCS3A01G417400.1	Wheat	cytosol	35.96	6.45
Zm00001d046526_P001	Maize	plastid	20.22	6.36
Bra020205.1-P	Field mustard	plastid	40.45	6.35
CDY09154	Canola	plastid	40.45	6.35
HORVU6Hr1G070700.2	Barley	mitochondrion	28.09	6.31
TraesCS7D01G555100.1	Wheat	cytosol	23.6	6.27
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	15.73	6.25
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	12.36	5.7
EES14677	Sorghum	cytosol, mitochondrion, nucleus, plastid	29.21	5.53
CDY22112	Canola	cytosol	29.21	5.39
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	14.61	5.35
TraesCS5D01G484100.1	Wheat	cytosol	21.35	5.12
TraesCS3A01G417500.1	Wheat	cytosol	22.47	5.12
TraesCS5B01G284300.1	Wheat	cytosol	19.1	4.94
TraesCS5D01G292400.1	Wheat	cytosol	19.1	4.94
TraesCSU01G016600.1	Wheat	mitochondrion	14.61	4.81
CDY21990	Canola	cytosol	10.11	4.69
TraesCS6A01G089600.1	Wheat	cytosol, mitochondrion	16.85	4.4
TraesCS6B01G112000.1	Wheat	mitochondrion	16.85	4.35
TraesCS5B01G466500.1	Wheat	extracellular	4.49	3.81
TraesCS6B01G067700.1	Wheat	plastid	11.24	3.73
TraesCS6A01G051000.1	Wheat	plastid	13.48	3.23
CDX77948	Canola	cytosol	5.62	2.96
CDY21988	Canola	cytosol	4.49	2.65
Os08t0195900-00	Rice	cytosol, mitochondrion, nucleus, plastid	8.99	2.65
Os08t0193200-00	Rice	cytosol	3.37	2.61
TraesCS2A01G071400.1	Wheat	cytosol	2.25	1.89
Os08t0193500-00	Rice	cytosol	4.49	1.83
Os11t0637300-00	Rice	cytosol	2.25	1.67
TraesCS5B01G081700.1	Wheat	cytosol	2.25	1.2
HORVU2Hr1G020470.1	Barley	mitochondrion	1.12	0.85
TraesCS4D01G274100.1	Wheat	cytosol	1.12	0.7
Os08t0195000-00	Rice	cytosol, peroxisome, plastid	1.12	0.4
OQU80174	Sorghum	cytosol	0.0	0.0
Os08t0194000-00	Rice	cytosol, vacuole	0.0	0.0
Os08t0196200-01	Rice	cytosol	0.0	0.0
TraesCS7A01G484100.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400058969	EnsemblPlantsGene:PGSC0003DMG400022903	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44078
PANTHER:PTHR44078:SF5	PGSC:PGSC0003DMG400022903	SUPFAM:SSF52047	UniParc:UPI0002957754	UniProt:M1C3L3	MapMan:35.2

Description

F-box/LRR-repeat protein 22 [Source:PGSC_GENE;Acc:PGSC0003DMG400022903]

Coordinates

chr3:+:61292365..61292959

Molecular Weight (calculated)

10013.2 Da

IEP (calculated)

4.421

GRAVY (calculated)

0.138

Length

89 amino acids

Sequence
(BLAST)

1: MEFETEEEKN EDALAIAAHL PLLCQLQLIG NALTVWGLEA VLVGCPNFKS LDLRRCLGLD LSGPIGDRCR RMADFRHPFD SMSDFMFLV

Best Arabidopsis Sequence Match ( AT4G05490.1 )
(BLAST)

001: MVTSSSSPPL ATSQLPVMKG EEKPSNWAEL PPDLLSSILL RLSPLEILEN ARKVCRSWRR VSKDPLIWRR IDMRNLRRLY CIYAMEACCR HVVDLSQGGL
101: LEFNIDQWRF QTTSLLNYMA ERSSNLRRLR VKGGQITSVG IFEAIVKLPL LEELELLYCS IEEEHFKTIG QACPNLKTLK LVGFWSHLNE SDNDALAIAD
201: TMPGLLHLQL ISNGLTNIGL NAILDGCPHL ECLDLRQCFN INLFGDLERQ CLERIKDFRC PNDVLDDYNY VIFSDNGSIE DEKGEEEENY SYGSDDTEYG
301: YRRSADF

Arabidopsis Description

FBL22Putative F-box/LRR-repeat protein 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.