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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G05460.1 TraesCS3A01G457400.1 AT4G02570.1 12795696
AT4G05460.1 TraesCS3B01G497300.1 AT4G02570.1 12795696
AT4G05460.1 TraesCS3D01G450200.1 AT4G02570.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G081700.1 Wheat cytosol 53.59 98.8
TraesCS5A01G075400.1 Wheat cytosol 98.69 98.69
HORVU5Hr1G020150.1 Barley mitochondrion 98.04 88.5
Os02t0317500-01 Rice cytosol 67.97 63.03
TraesCS5D01G100900.1 Wheat endoplasmic reticulum 25.82 45.93
TraesCS5D01G484300.1 Wheat cytosol 27.78 41.87
TraesCS5D01G468200.1 Wheat cytosol, plasma membrane, plastid 27.45 41.58
TraesCS1D01G034100.1 Wheat cytosol 43.79 40.85
Bra000817.1-P Field mustard plastid 22.88 38.89
CDY21989 Canola cytosol 10.13 38.27
PGSC0003DMT400058969 Potato cytosol 11.11 38.2
TraesCS2D01G070200.1 Wheat cytosol 40.2 37.96
TraesCS1D01G126200.1 Wheat nucleus 35.95 37.8
AT4G03630.1 Thale cress cytosol 26.8 37.27
CDX99649 Canola cytosol 27.45 36.05
TraesCS2D01G311900.1 Wheat cytosol 36.6 35.78
Solyc08g013780.1.1 Tomato cytosol 14.38 35.77
CDY15937 Canola cytosol 27.12 35.62
AT4G05497.1 Thale cress plastid 28.43 35.37
Bra030342.1-P Field mustard cytosol 26.47 34.76
CDY21333 Canola nucleus, plastid 33.33 34.69
CDX73787 Canola cytosol 28.76 34.38
TraesCS2D01G159000.1 Wheat plastid 34.64 34.3
CDY48578 Canola cytosol 28.1 34.26
AT4G05460.1 Thale cress cytosol 33.66 34.11
TraesCS7D01G194300.1 Wheat cytosol 33.33 33.89
Bra034230.1-P Field mustard cytosol 29.09 33.84
TraesCS3D01G405300.1 Wheat nucleus 38.56 33.71
CDY48580 Canola cytosol 33.66 33.55
AT4G05490.1 Thale cress plastid 33.66 33.55
TraesCS7D01G194400.1 Wheat extracellular 34.64 33.54
Bra034226.1-P Field mustard cytosol 31.37 33.33
Bra034227.1-P Field mustard plastid 34.31 33.02
TraesCS7D01G300400.1 Wheat mitochondrion, nucleus 37.25 32.95
CDX90789 Canola cytosol 32.03 32.56
TraesCS7D01G381100.1 Wheat mitochondrion 36.27 32.55
TraesCS7D01G555100.1 Wheat cytosol 35.62 32.54
CDY48575 Canola plastid 33.66 32.49
KRH21099 Soybean cytosol 33.01 32.48
Bra034231.1-P Field mustard cytosol, plastid 27.45 32.43
PGSC0003DMT400016134 Potato cytosol 30.72 32.41
AT5G52480.1 Thale cress cytosol 25.49 32.37
VIT_10s0003g04300.t01 Wine grape cytosol 33.66 32.09
Bra000816.1-P Field mustard plastid 33.99 32.0
Solyc08g013800.2.1 Tomato cytosol 30.72 31.97
Bra034229.1-P Field mustard cytosol 28.76 31.88
KRH11147 Soybean cytosol 33.01 31.76
CDY48574 Canola cytosol 30.72 31.54
CDX77948 Canola cytosol 17.32 31.36
CDY62000 Canola plastid 33.66 31.31
CDY09910 Canola nucleus 32.68 31.25
CDY21988 Canola cytosol 15.36 31.13
PGSC0003DMT400015035 Potato cytosol 31.05 31.05
PGSC0003DMT400052833 Potato cytosol 27.78 30.91
TraesCS2D01G011000.1 Wheat cytosol 32.03 30.82
PGSC0003DMT400015030 Potato cytosol 29.41 30.41
AT4G05470.1 Thale cress cytosol, plastid 30.39 30.39
Bra030690.1-P Field mustard cytosol 27.78 30.25
CDY15618 Canola cytosol 27.78 30.25
CDX86473 Canola cytosol 25.16 30.08
Bra034228.1-P Field mustard cytosol 29.09 29.97
CDY48576 Canola cytosol 29.09 29.97
CDY10283 Canola cytosol 30.72 29.94
Solyc08g006940.2.1 Tomato cytosol 30.39 29.9
CDY48577 Canola cytosol 27.45 29.79
PGSC0003DMT400090939 Potato cytosol 29.41 29.7
Bra000723.1-P Field mustard cytosol 14.71 29.61
TraesCS3D01G413100.1 Wheat cytosol, endoplasmic reticulum, vacuole 33.66 29.6
CDY59275 Canola plastid 31.05 29.59
AT4G05475.1 Thale cress cytosol 29.41 29.13
TraesCS5D01G292400.1 Wheat cytosol 32.68 29.07
CDY21986 Canola cytosol, plastid 28.43 29.0
CDY06267 Canola nucleus 32.35 28.45
Bra031582.1-P Field mustard nucleus 32.03 28.0
PGSC0003DMT400054358 Potato cytosol 30.07 27.14
TraesCS4D01G274100.1 Wheat cytosol 12.09 26.06
CDY21990 Canola cytosol 16.01 25.52
TraesCS7D01G203600.1 Wheat plastid 28.43 25.51
TraesCS7D01G203500.1 Wheat plastid 27.78 25.0
Solyc08g013820.2.1 Tomato cytosol 30.39 25.0
TraesCS3D01G413000.1 Wheat cytosol 34.64 24.2
TraesCS3D01G412900.1 Wheat cytosol, plastid 36.27 23.72
CDY21983 Canola cytosol 20.91 22.61
TraesCS5D01G484100.1 Wheat cytosol 26.47 21.83
Solyc08g006920.1.1 Tomato cytosol, mitochondrion, nucleus 20.26 20.46
Bra034194.1-P Field mustard cytosol 31.37 17.94
Bra020205.1-P Field mustard plastid 31.37 16.93
CDY09154 Canola plastid 31.37 16.93
CDY22112 Canola cytosol 26.14 16.6
Protein Annotations
EnsemblPlants:TraesCS5D01G088900.1EnsemblPlantsGene:TraesCS5D01G088900Gene3D:1.20.1280.50Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sf
PANTHER:PTHR44078PANTHER:PTHR44078:SF3PFAM:PF12937PFscan:PS50181SEG:segSUPFAM:SSF52047
SUPFAM:SSF81383MapMan:35.1::::
Description
No Description!
Coordinates
chr5D:-:95310116..95322124
Molecular Weight (calculated)
34394.0 Da
IEP (calculated)
5.084
GRAVY (calculated)
-0.203
Length
306 amino acids
Sequence
(BLAST)
001: MASPSPSPSP DWAGLPDDAL LTVFERLGAP EVLMGAGVVC RNWLRVATGE PDLWRRVDLS DCFDPTIDMV AMACAAVDRA DGRLEHFAAD CFVTDALLFY
101: MAKRTNGLKS LRLVNCMKVS HKGLVALGKR SPHLEELELT TCSIYISMKA VGQAFPQLKR LRLNNRWVNV ECEEQFDNHR ALDIASNMPE LRHLQLFANR
201: LRNSALAAIL DNCPHLESLD LRQCFNIHID AELRAKCARL RDVRLPKDST NDYDHEAYIE TLELNSLPLL FAHDGVFTQQ YPFHGSDHSD EDDQEDLDVA
301: LGHLAL
Best Arabidopsis Sequence Match ( AT4G05470.1 )
(BLAST)
001: MTASSKMTSS TTLLSLFMKE DEEGRNKKTT TSTTLESLLM KERRNWVDLP PELTTSILLR LSLTDILDNA QKVCKEWRRI CKDPSMWRKI NTRDCLMYNF
101: DFVSMCRHIV DLSQGGLLEI NVDEHFLSDS LLSYITDRSR NLRSLGLGMC FPRVTKLGVV NAIAKIPLLE TLEVTHSCIK LDLKAIGHAC PQLKTLKLNS
201: LGRLWPASDK YDSNVLDDMG PLECDDDALA IAESMPKLHH LQLMANRLTN TGLNAILDGC PHLEHLDVRK CFRISLVGNL EKRCLEMIKE LRRPGDSTAD
301: YPYNGV
Arabidopsis Description
RNI-like superfamily protein [Source:TAIR;Acc:AT4G05470]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.