Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G128000.1 | Wheat | cytosol | 57.73 | 72.1 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 54.64 | 45.95 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 52.58 | 43.71 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 43.99 | 40.89 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 47.08 | 40.18 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 40.89 | 39.53 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 22.68 | 38.37 |
| Bra000817.1-P | Field mustard | plastid | 23.37 | 37.78 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 40.21 | 37.03 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 25.43 | 36.45 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 37.8 | 35.95 |
| CDY21989 | Canola | cytosol | 9.97 | 35.8 |
| CDX99649 | Canola | cytosol | 28.52 | 35.62 |
| CDY15937 | Canola | cytosol | 28.18 | 35.19 |
| Bra030342.1-P | Field mustard | cytosol | 28.18 | 35.19 |
| AT4G03630.1 | Thale cress | cytosol | 26.46 | 35.0 |
| Bra034230.1-P | Field mustard | cytosol | 30.93 | 34.22 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 23.37 | 33.66 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 25.43 | 33.33 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 36.43 | 33.33 |
| CDY21988 | Canola | cytosol | 17.18 | 33.11 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 16.15 | 33.1 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 37.11 | 32.93 |
| TraesCS2D01G159000.1 | Wheat | plastid | 34.71 | 32.69 |
| Zm00001d046526_P001 | Maize | plastid | 31.62 | 32.51 |
| CDY48578 | Canola | cytosol | 27.84 | 32.27 |
| CDY48580 | Canola | cytosol | 34.02 | 32.25 |
| CDX73787 | Canola | cytosol | 27.49 | 31.25 |
| CDX86473 | Canola | cytosol | 27.49 | 31.25 |
| CDY21333 | Canola | nucleus, plastid | 31.27 | 30.95 |
| AT4G05490.1 | Thale cress | plastid | 32.65 | 30.94 |
| CDX90789 | Canola | cytosol | 31.96 | 30.9 |
| KRH21099 | Soybean | cytosol | 32.65 | 30.55 |
| TraesCS7D01G203600.1 | Wheat | plastid | 35.74 | 30.5 |
| Bra034229.1-P | Field mustard | cytosol | 28.87 | 30.43 |
| CDY48576 | Canola | cytosol | 30.93 | 30.3 |
| CDY48574 | Canola | cytosol | 30.93 | 30.2 |
| CDX77948 | Canola | cytosol | 17.53 | 30.18 |
| AT4G05497.1 | Thale cress | plastid | 25.43 | 30.08 |
| Bra034226.1-P | Field mustard | cytosol | 29.55 | 29.86 |
| Bra000816.1-P | Field mustard | plastid | 33.33 | 29.85 |
| CDY62000 | Canola | plastid | 33.68 | 29.79 |
| TraesCS7D01G203500.1 | Wheat | plastid | 34.71 | 29.71 |
| CDY21986 | Canola | cytosol, plastid | 30.58 | 29.67 |
| CDY48575 | Canola | plastid | 32.3 | 29.65 |
| Bra034228.1-P | Field mustard | cytosol | 30.24 | 29.63 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 32.99 | 29.63 |
| Bra034227.1-P | Field mustard | plastid | 32.3 | 29.56 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 34.02 | 29.55 |
| CDY15618 | Canola | cytosol | 28.52 | 29.54 |
| Bra030690.1-P | Field mustard | cytosol | 28.52 | 29.54 |
| AT4G05460.1 | Thale cress | cytosol | 30.58 | 29.47 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 26.12 | 29.34 |
| CDY59275 | Canola | plastid | 32.3 | 29.28 |
| Solyc08g013780.1.1 | Tomato | cytosol | 12.37 | 29.27 |
| KRH11147 | Soybean | cytosol | 31.96 | 29.25 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.93 | 29.21 |
| CDY09910 | Canola | nucleus | 31.96 | 29.06 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 31.96 | 28.97 |
| AT4G05475.1 | Thale cress | cytosol | 30.58 | 28.8 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 30.24 | 28.76 |
| PGSC0003DMT400052833 | Potato | cytosol | 26.8 | 28.36 |
| CDY10283 | Canola | cytosol | 29.9 | 27.71 |
| CDY48577 | Canola | cytosol | 26.8 | 27.66 |
| Solyc08g013800.2.1 | Tomato | cytosol | 27.84 | 27.55 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 32.3 | 27.33 |
| CDY06267 | Canola | nucleus | 32.3 | 27.01 |
| Bra000723.1-P | Field mustard | cytosol | 14.09 | 26.97 |
| AT5G52480.1 | Thale cress | cytosol | 22.34 | 26.97 |
| PGSC0003DMT400016134 | Potato | cytosol | 26.8 | 26.9 |
| PGSC0003DMT400090939 | Potato | cytosol | 27.84 | 26.73 |
| Solyc08g006940.2.1 | Tomato | cytosol | 28.18 | 26.37 |
| Bra031582.1-P | Field mustard | nucleus | 31.62 | 26.29 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 31.27 | 26.15 |
| PGSC0003DMT400015035 | Potato | cytosol | 26.8 | 25.49 |
| PGSC0003DMT400015030 | Potato | cytosol | 25.77 | 25.34 |
| CDY21990 | Canola | cytosol | 15.12 | 22.92 |
| CDY21983 | Canola | cytosol | 21.31 | 21.91 |
| PGSC0003DMT400054358 | Potato | cytosol | 25.43 | 21.83 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 34.71 | 21.58 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 32.3 | 21.46 |
| Solyc08g013820.2.1 | Tomato | cytosol | 27.15 | 21.24 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 24.05 | 18.87 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 18.9 | 18.15 |
| Bra034194.1-P | Field mustard | cytosol | 31.96 | 17.38 |
| CDY09154 | Canola | plastid | 32.65 | 16.75 |
| Bra020205.1-P | Field mustard | plastid | 32.65 | 16.75 |
| CDY22112 | Canola | cytosol | 26.12 | 15.77 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G126200.1 | EnsemblPlantsGene:TraesCS1D01G126200 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF3 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg |
| SMART:SM00256 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr1D:-:137433315..137436022
Molecular Weight (calculated)
33595.8 Da
IEP (calculated)
8.813
GRAVY (calculated)
-0.337
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFPSRRRR RPRRCGEVRP SADWADLPID ALLSVLQYLE TIELMVGGAG RVCRSWRRAI RNEPELWRRI DMRIHKYHNY RIDEGMAKEA VRRGSGRCES
101: FWGEDATDHF LLFLTEQAPS LKSLRLISSK HITNEGLLAA LNKFPVLEEL ELSLCKHVFG KVYEGIGIAC PRLKCLKVSY PCFYSIEDIE YNKDEEALGI
201: ATMFVLRSLQ LFGSELTNAG LATILDNCPH LVYLDVRHCF NIHMDITLRA KCAGIKTMKL PHGSTDDYEF QIENPVRTRA RKPRRDYKPY V
101: FWGEDATDHF LLFLTEQAPS LKSLRLISSK HITNEGLLAA LNKFPVLEEL ELSLCKHVFG KVYEGIGIAC PRLKCLKVSY PCFYSIEDIE YNKDEEALGI
201: ATMFVLRSLQ LFGSELTNAG LATILDNCPH LVYLDVRHCF NIHMDITLRA KCAGIKTMKL PHGSTDDYEF QIENPVRTRA RKPRRDYKPY V
001: MATSTTLQSL LMKEDEEQRN KRRTTSTMFL KKDDEERINW VDLPPELTTS ILLRLSVTDI LDNARKLCRA WRRICKDPSM WRKINLRDCL MYEFDFESMC
101: RHIVDLSQGG LLEINIEHFV SDSLLSYIVD RSCNLKSLGI SIYEPMTNKG VMNGIEKLPL LETLVIFHSS IKLDLKAIGH ACPQLKTLKL NSLGSELAHD
201: ISQVGYIPLL ECDDDALAIA ESMPKLRHLQ LMGNGLTNTG LNAILDGCPH LEEHLDVRKC FNINLVGNLE KRCMKRIKEL RRPHDSTADY PYSISVSMVV
301: QMMITSRYH
101: RHIVDLSQGG LLEINIEHFV SDSLLSYIVD RSCNLKSLGI SIYEPMTNKG VMNGIEKLPL LETLVIFHSS IKLDLKAIGH ACPQLKTLKL NSLGSELAHD
201: ISQVGYIPLL ECDDDALAIA ESMPKLRHLQ LMGNGLTNTG LNAILDGCPH LEEHLDVRKC FNINLVGNLE KRCMKRIKEL RRPHDSTADY PYSISVSMVV
301: QMMITSRYH
Arabidopsis Description
Putative F-box protein At4g05475 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.