Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063662 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | PGSC0003DMT400063662 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400016134 | Potato | cytosol | 75.64 | 71.72 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 57.45 | 52.15 |
| CDX99649 | Canola | cytosol | 38.18 | 45.06 |
| CDY15937 | Canola | cytosol | 37.82 | 44.64 |
| Bra030342.1-P | Field mustard | cytosol | 37.09 | 43.78 |
| CDY21988 | Canola | cytosol | 23.64 | 43.05 |
| PGSC0003DMT400058969 | Potato | cytosol | 13.82 | 42.7 |
| PGSC0003DMT400090939 | Potato | cytosol | 46.18 | 41.91 |
| Bra034230.1-P | Field mustard | cytosol | 38.91 | 40.68 |
| CDY48578 | Canola | cytosol | 36.36 | 39.84 |
| CDY21333 | Canola | nucleus, plastid | 41.09 | 38.44 |
| CDX73787 | Canola | cytosol | 35.64 | 38.28 |
| AT4G05497.1 | Thale cress | plastid | 34.18 | 38.21 |
| CDX86473 | Canola | cytosol | 35.27 | 37.89 |
| Bra034226.1-P | Field mustard | cytosol | 39.64 | 37.85 |
| Bra030690.1-P | Field mustard | cytosol | 38.18 | 37.37 |
| CDY15618 | Canola | cytosol | 38.18 | 37.37 |
| CDX77948 | Canola | cytosol | 22.91 | 37.28 |
| CDY48574 | Canola | cytosol | 40.36 | 37.25 |
| CDY48575 | Canola | plastid | 42.55 | 36.91 |
| Bra034227.1-P | Field mustard | plastid | 42.55 | 36.79 |
| PGSC0003DMT400015035 | Potato | cytosol | 40.73 | 36.6 |
| CDX90789 | Canola | cytosol | 40.0 | 36.54 |
| PGSC0003DMT400015030 | Potato | cytosol | 39.27 | 36.49 |
| AT4G05460.1 | Thale cress | cytosol | 40.0 | 36.42 |
| Bra034229.1-P | Field mustard | cytosol | 36.36 | 36.23 |
| CDY48580 | Canola | cytosol | 40.36 | 36.16 |
| KRH21099 | Soybean | cytosol | 40.73 | 36.01 |
| CDY21989 | Canola | cytosol | 10.55 | 35.8 |
| CDY09910 | Canola | nucleus | 41.45 | 35.62 |
| Bra000817.1-P | Field mustard | plastid | 23.27 | 35.56 |
| AT4G03630.1 | Thale cress | cytosol | 28.0 | 35.0 |
| CDY48577 | Canola | cytosol | 35.64 | 34.75 |
| KRH11147 | Soybean | cytosol | 39.64 | 34.28 |
| CDY48576 | Canola | cytosol | 36.73 | 34.01 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 39.64 | 33.96 |
| CDY10283 | Canola | cytosol | 38.55 | 33.76 |
| CDY62000 | Canola | plastid | 40.36 | 33.74 |
| Bra031582.1-P | Field mustard | nucleus | 42.91 | 33.71 |
| CDY06267 | Canola | nucleus | 42.55 | 33.62 |
| AT5G52480.1 | Thale cress | cytosol | 29.45 | 33.61 |
| Bra000723.1-P | Field mustard | cytosol | 18.55 | 33.55 |
| AT4G05490.1 | Thale cress | plastid | 37.45 | 33.55 |
| CDY21986 | Canola | cytosol, plastid | 36.36 | 33.33 |
| CDY59275 | Canola | plastid | 38.91 | 33.33 |
| Bra000816.1-P | Field mustard | plastid | 39.27 | 33.23 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 31.27 | 33.2 |
| Bra034228.1-P | Field mustard | cytosol | 35.64 | 33.0 |
| PGSC0003DMT400054358 | Potato | cytosol | 40.36 | 32.74 |
| AT4G05475.1 | Thale cress | cytosol | 36.0 | 32.04 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 35.27 | 31.7 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 30.18 | 31.09 |
| TraesCS3B01G443100.1 | Wheat | cytosol | 28.73 | 30.62 |
| Zm00001d024252_P001 | Maize | cytosol | 29.09 | 30.3 |
| CDY21990 | Canola | cytosol | 21.09 | 30.21 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 11.27 | 29.52 |
| TraesCS5D01G484300.1 | Wheat | cytosol | 21.45 | 29.06 |
| Zm00001d010914_P001 | Maize | cytosol | 34.55 | 29.05 |
| Os02t0317300-01 | Rice | cytosol | 34.55 | 28.96 |
| KXG24675 | Sorghum | cytosol | 30.18 | 28.82 |
| TraesCS5D01G468200.1 | Wheat | cytosol, plasma membrane, plastid | 21.09 | 28.71 |
| TraesCS1D01G034100.1 | Wheat | cytosol | 34.18 | 28.66 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 21.09 | 28.57 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 33.82 | 28.35 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 17.09 | 28.31 |
| HORVU1Hr1G004970.3 | Barley | cytosol | 33.09 | 28.09 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 20.73 | 28.08 |
| EES17669 | Sorghum | cytosol | 33.82 | 28.01 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 33.45 | 27.88 |
| TraesCS5D01G088900.1 | Wheat | cytosol | 30.91 | 27.78 |
| TraesCS2D01G070200.1 | Wheat | cytosol | 32.36 | 27.47 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 30.55 | 27.45 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 20.73 | 27.4 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 20.0 | 26.83 |
| KXG24670 | Sorghum | cytosol | 30.91 | 26.81 |
| TraesCS1D01G126200.1 | Wheat | nucleus | 28.36 | 26.8 |
| TraesCS5D01G100900.1 | Wheat | endoplasmic reticulum | 16.73 | 26.74 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 16.36 | 26.16 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 30.55 | 25.93 |
| TraesCS3B01G443800.1 | Wheat | nucleus | 32.36 | 25.8 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 29.82 | 25.62 |
| Zm00001d024764_P001 | Maize | cytosol | 33.09 | 25.49 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 32.0 | 25.43 |
| TraesCS7D01G300400.1 | Wheat | mitochondrion, nucleus | 32.0 | 25.43 |
| HORVU2Hr1G027710.1 | Barley | cytosol | 26.91 | 25.43 |
| TraesCS3A01G410700.1 | Wheat | mitochondrion | 32.36 | 25.43 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 32.36 | 25.43 |
| EES14679 | Sorghum | nucleus | 31.64 | 25.29 |
| Os02t0317500-01 | Rice | cytosol | 30.18 | 25.15 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 28.0 | 24.92 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 21.09 | 24.89 |
| HORVU5Hr1G020150.1 | Barley | mitochondrion | 30.55 | 24.78 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 26.55 | 24.75 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 31.27 | 24.57 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 20.0 | 24.55 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 20.0 | 24.55 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 9.45 | 24.53 |
| HORVU2Hr1G027770.2 | Barley | mitochondrion | 26.91 | 24.5 |
| TraesCS2B01G178700.1 | Wheat | plastid | 27.27 | 24.27 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 8.73 | 24.24 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 29.82 | 24.19 |
| Os11t0637300-00 | Rice | cytosol | 10.55 | 24.17 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 28.36 | 24.15 |
| Os08t0194350-00 | Rice | cytosol | 23.27 | 24.06 |
| TraesCS2D01G159000.1 | Wheat | plastid | 26.91 | 23.95 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 26.55 | 23.86 |
| OQU80176 | Sorghum | mitochondrion | 19.27 | 23.77 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 29.45 | 23.41 |
| Zm00001d024265_P001 | Maize | cytosol | 25.45 | 23.33 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 16.36 | 23.32 |
| HORVU0Hr1G019800.1 | Barley | cytosol | 25.82 | 22.9 |
| HORVU2Hr1G020470.1 | Barley | mitochondrion | 9.82 | 22.88 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 25.82 | 22.83 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 26.55 | 22.74 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 25.45 | 22.73 |
| TraesCS7D01G381100.1 | Wheat | mitochondrion | 28.0 | 22.58 |
| Os08t0193900-01 | Rice | nucleus | 32.36 | 22.47 |
| OQU80048 | Sorghum | cytosol | 23.27 | 22.46 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 25.09 | 22.4 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 25.45 | 22.36 |
| TraesCS2D01G311900.1 | Wheat | cytosol | 25.45 | 22.36 |
| TraesCS7D01G194400.1 | Wheat | extracellular | 25.45 | 22.15 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 26.55 | 22.12 |
| TraesCS7D01G203600.1 | Wheat | plastid | 27.27 | 21.99 |
| TraesCS7D01G194300.1 | Wheat | cytosol | 24.0 | 21.93 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 27.64 | 21.84 |
| TraesCS7D01G555100.1 | Wheat | cytosol | 26.55 | 21.79 |
| TraesCS7D01G203500.1 | Wheat | plastid | 26.91 | 21.76 |
| Os08t0193200-00 | Rice | cytosol | 9.09 | 21.74 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 21.82 | 21.35 |
| Zm00001d046526_P001 | Maize | plastid | 21.82 | 21.2 |
| CDY21983 | Canola | cytosol | 21.45 | 20.85 |
| TraesCS6B01G067700.1 | Wheat | plastid | 20.0 | 20.52 |
| HORVU6Hr1G014660.1 | Barley | cytosol | 15.64 | 20.19 |
| Bra034194.1-P | Field mustard | cytosol | 39.27 | 20.19 |
| TraesCS2D01G011000.1 | Wheat | cytosol | 23.27 | 20.13 |
| Os08t0193500-00 | Rice | cytosol | 16.0 | 20.09 |
| CDY22112 | Canola | cytosol | 34.91 | 19.92 |
| TraesCS4D01G274100.1 | Wheat | cytosol | 10.18 | 19.72 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 25.09 | 19.55 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 24.36 | 19.48 |
| Os08t0191300-00 | Rice | cytosol, golgi | 18.18 | 19.46 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 30.55 | 19.44 |
| OQU80174 | Sorghum | cytosol | 9.45 | 19.4 |
| TraesCSU01G016500.1 | Wheat | mitochondrion | 24.73 | 19.21 |
| TraesCS5D01G292400.1 | Wheat | cytosol | 24.0 | 19.19 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 24.36 | 19.14 |
| Zm00001d046527_P001 | Maize | extracellular, mitochondrion, nucleus | 15.27 | 18.92 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 17.09 | 18.8 |
| Bra020205.1-P | Field mustard | plastid | 38.18 | 18.52 |
| CDY09154 | Canola | plastid | 38.18 | 18.52 |
| HORVU2Hr1G077990.2 | Barley | plastid | 25.09 | 18.45 |
| Os08t0193300-00 | Rice | cytosol | 21.82 | 18.02 |
| TraesCS6B01G310200.1 | Wheat | plastid | 23.64 | 18.01 |
| TraesCS3B01G452300.1 | Wheat | plastid | 29.82 | 17.63 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 21.82 | 17.6 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 29.82 | 17.45 |
| HORVU6Hr1G070690.2 | Barley | extracellular, mitochondrion, plasma membrane | 18.91 | 17.39 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 15.27 | 17.28 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 29.45 | 17.12 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 21.45 | 17.1 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 29.45 | 17.09 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 26.91 | 16.89 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 28.73 | 16.88 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 26.55 | 16.4 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 29.45 | 16.33 |
| TraesCSU01G016600.1 | Wheat | mitochondrion | 15.64 | 15.93 |
| HORVU6Hr1G070700.2 | Barley | mitochondrion | 22.91 | 15.91 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 21.82 | 15.35 |
| TraesCS6A01G051000.1 | Wheat | plastid | 20.73 | 15.32 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 16.0 | 14.57 |
| TraesCS5D01G484100.1 | Wheat | cytosol | 19.27 | 14.29 |
| Os08t0196200-01 | Rice | cytosol | 7.64 | 7.66 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.36 | 0.26 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | UniProt:M1BU19 |
| PFAM:PF00646 | PFAM:PF13516 | EnsemblPlantsGene:PGSC0003DMG400020507 | PGSC:PGSC0003DMG400020507 | EnsemblPlants:PGSC0003DMT400052833 | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF5 | SUPFAM:SSF52047 | UniParc:UPI000295121F | SEG:seg | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020507]
Coordinates
chr8:+:1315299..1317856
Molecular Weight (calculated)
31440.0 Da
IEP (calculated)
5.932
GRAVY (calculated)
-0.304
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKEPPWMEL QEGIWENILQ RLGVIEILKT ARKVCRKWRQ ICQEPSMWRV INMRNNGNLT EIGYQLEKIC RRAVDRSRGE LIDINLQYFG NDKLVQYIAE
101: RSGKLKRLSI ACCYFKVCES LVEAVQKLPL LEELSLTHTA LTIEGIEALG HSCPRLKSFE FNKSLYMGSV DDSDNEDERN EEALAIAKNL PTLHHLHLIG
201: NSMTNKGLQA ILDSCPHLVS LDLRLCKYVS LNKVLSSRIS GKIKDVKLPH ESLEGLEFSF EACWDEDLSD SMSDD
101: RSGKLKRLSI ACCYFKVCES LVEAVQKLPL LEELSLTHTA LTIEGIEALG HSCPRLKSFE FNKSLYMGSV DDSDNEDERN EEALAIAKNL PTLHHLHLIG
201: NSMTNKGLQA ILDSCPHLVS LDLRLCKYVS LNKVLSSRIS GKIKDVKLPH ESLEGLEFSF EACWDEDLSD SMSDD
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.