Factsheet for TraesCS5B01G466500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G468200.1	Wheat	cytosol, plasma membrane, plastid	91.43	47.52
TraesCS5B01G484500.1	Wheat	cytosol	73.33	37.56
TraesCS5B01G484300.1	Wheat	cytosol	70.48	36.45
TraesCS5B01G484200.1	Wheat	cytosol, peroxisome, plastid	66.67	36.27
TraesCS5B01G094800.1	Wheat	endoplasmic reticulum	55.24	33.72
TraesCS5B01G484600.1	Wheat	cytosol	66.67	33.65
TraesCS2B01G385500.1	Wheat	cytosol, plasma membrane, plastid	67.62	31.7
TraesCS5B01G484100.1	Wheat	cytosol	62.86	29.46
TraesCS5B01G081700.1	Wheat	cytosol	43.81	27.71
CDY21988	Canola	cytosol	34.29	23.84
Zm00001d024252_P001	Maize	cytosol	56.19	22.35
TraesCS2B01G178700.1	Wheat	plastid	62.86	21.36
KXG24675	Sorghum	cytosol	57.14	20.83
CDX77948	Canola	cytosol	33.33	20.71
TraesCS5B01G284300.1	Wheat	cytosol	59.05	18.02
CDY21990	Canola	cytosol	32.38	17.71
TraesCS7B01G480000.1	Wheat	cytosol	52.38	17.13
TraesCS3B01G443100.1	Wheat	cytosol	39.05	15.89
CDY48578	Canola	cytosol	36.19	15.14
TraesCS3B01G452600.1	Wheat	extracellular	46.67	14.85
Bra034231.1-P	Field mustard	cytosol, plastid	36.19	14.67
Bra034230.1-P	Field mustard	cytosol	34.29	13.69
TraesCS2B01G332200.1	Wheat	cytosol	40.0	13.42
TraesCS1B01G041200.1	Wheat	cytosol	41.9	13.33
CDX99649	Canola	cytosol	29.52	13.3
CDX73787	Canola	cytosol	32.38	13.28
TraesCS2B01G085200.1	Wheat	cytosol	40.95	13.27
CDY21333	Canola	nucleus, plastid	37.14	13.27
TraesCS2B01G085400.1	Wheat	cytosol	40.0	13.12
TraesCS3B01G452300.1	Wheat	plastid	58.1	13.12
CDY15937	Canola	cytosol	28.57	12.88
Bra034226.1-P	Field mustard	cytosol	35.24	12.85
TraesCS4B01G183800.1	Wheat	cytosol	37.14	12.75
TraesCS3B01G452500.1	Wheat	cytosol	57.14	12.69
Bra034229.1-P	Field mustard	cytosol	33.33	12.68
TraesCS3B01G452400.1	Wheat	cytosol	53.33	12.58
AT4G05460.1	Thale cress	cytosol	36.19	12.58
VIT_10s0003g04300.t01	Wine grape	cytosol	38.1	12.46
Bra030342.1-P	Field mustard	cytosol	27.62	12.45
CDY48574	Canola	cytosol	35.24	12.42
PGSC0003DMT400016134	Potato	cytosol	34.29	12.41
CDY48577	Canola	cytosol	33.33	12.41
CDY48580	Canola	cytosol	36.19	12.38
CDX90789	Canola	cytosol	35.24	12.29
TraesCS3B01G444000.1	Wheat	nucleus	40.95	12.29
TraesCS4B01G183700.1	Wheat	cytosol	34.29	12.2
AT4G05497.1	Thale cress	plastid	28.57	12.2
TraesCS3B01G443800.1	Wheat	nucleus	40.0	12.17
TraesCS7B01G098400.1	Wheat	cytosol	35.24	12.01
Bra034227.1-P	Field mustard	plastid	36.19	11.95
TraesCS7B01G205200.1	Wheat	mitochondrion	39.05	11.85
Bra030690.1-P	Field mustard	cytosol	31.43	11.74
CDY15618	Canola	cytosol	31.43	11.74
Bra000816.1-P	Field mustard	plastid	36.19	11.69
CDY48575	Canola	plastid	34.29	11.36
PGSC0003DMT400052833	Potato	cytosol	29.52	11.27
CDY62000	Canola	plastid	35.24	11.25
CDY10283	Canola	cytosol	33.33	11.15
KRH21099	Soybean	cytosol	32.38	10.93
CDY59275	Canola	plastid	33.33	10.9
TraesCS6B01G067700.1	Wheat	plastid	27.62	10.82
AT4G05490.1	Thale cress	plastid	31.43	10.75
CDX86473	Canola	cytosol	25.71	10.55
Solyc08g013800.2.1	Tomato	cytosol	29.52	10.54
PGSC0003DMT400015030	Potato	cytosol	29.52	10.47
CDY48576	Canola	cytosol	29.52	10.44
CDY21986	Canola	cytosol, plastid	29.52	10.33
KRH11147	Soybean	cytosol	30.48	10.06
PGSC0003DMT400054358	Potato	cytosol	32.38	10.03
TraesCS7B01G287400.1	Wheat	cytosol	30.48	9.91
PGSC0003DMT400090939	Potato	cytosol	28.57	9.9
PGSC0003DMT400015035	Potato	cytosol	28.57	9.8
Bra034228.1-P	Field mustard	cytosol	27.62	9.76
AT4G05475.1	Thale cress	cytosol	28.57	9.71
CDY06267	Canola	nucleus	31.43	9.48
AT4G05470.1	Thale cress	cytosol, plastid	27.62	9.48
CDY09910	Canola	nucleus	28.57	9.38
Bra031582.1-P	Field mustard	nucleus	30.48	9.14
Solyc08g006940.2.1	Tomato	cytosol	26.67	9.0
TraesCS6B01G310200.1	Wheat	plastid	29.52	8.59
TraesCS6B01G112000.1	Wheat	mitochondrion	27.62	8.41
TraesCS6B01G112100.1	Wheat	mitochondrion	27.62	8.29
AT4G03630.1	Thale cress	cytosol	17.14	8.18
Solyc08g013820.2.1	Tomato	cytosol	28.57	8.06
CDY22112	Canola	cytosol	30.48	6.64
Bra000723.1-P	Field mustard	cytosol	9.52	6.58
Bra020205.1-P	Field mustard	plastid	32.38	6.0
CDY09154	Canola	plastid	32.38	6.0
Bra034194.1-P	Field mustard	cytosol	30.48	5.98
AT5G52480.1	Thale cress	cytosol	13.33	5.81
PGSC0003DMT400058969	Potato	cytosol	3.81	4.49
TraesCS6B01G067500.1	Wheat	cytosol, extracellular	8.57	3.7
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	10.48	3.63
Bra000817.1-P	Field mustard	plastid	1.9	1.11
Solyc08g013780.1.1	Tomato	cytosol	0.0	0.0
CDY21983	Canola	cytosol	0.0	0.0
CDY21989	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS5B01G466500.1	EnsemblPlantsGene:TraesCS5B01G466500	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	PANTHER:PTHR44078	SUPFAM:SSF81383	TMHMM:TMhelix	MapMan:35.2	:

Description

No Description!

Coordinates

chr5B:-:640491413..640491730

Molecular Weight (calculated)

11851.6 Da

IEP (calculated)

6.519

GRAVY (calculated)

0.272

Length

105 amino acids

Sequence
(BLAST)

001: MDWSLLPLDA LSLIFVRLGA VDILMGAGLV CHSWLVAAKL PEVWRSVDMD KHEVVLRKGD AVLRQMAKAA VDRSDGQLRE FAGRLFVTDE LIKYIVERYY
101: SSITT

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.