Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G443800.1 | Wheat | nucleus | 82.56 | 61.74 |
| TraesCS3B01G444000.1 | Wheat | nucleus | 80.23 | 59.14 |
| TraesCS7B01G205200.1 | Wheat | mitochondrion | 72.48 | 54.05 |
| EES14679 | Sorghum | nucleus | 66.67 | 50.0 |
| TraesCS7B01G287400.1 | Wheat | cytosol | 57.75 | 46.13 |
| TraesCS2B01G332200.1 | Wheat | cytosol | 53.88 | 44.41 |
| TraesCS4B01G183700.1 | Wheat | cytosol | 49.61 | 43.39 |
| TraesCS4B01G183800.1 | Wheat | cytosol | 50.78 | 42.81 |
| TraesCS7B01G098400.1 | Wheat | cytosol | 50.0 | 41.88 |
| TraesCS5B01G466500.1 | Wheat | extracellular | 15.89 | 39.05 |
| CDY21989 | Canola | cytosol | 12.02 | 38.27 |
| TraesCS5B01G081700.1 | Wheat | cytosol | 24.03 | 37.35 |
| TraesCS5B01G094800.1 | Wheat | endoplasmic reticulum | 24.42 | 36.63 |
| TraesCS6B01G067700.1 | Wheat | plastid | 37.98 | 36.57 |
| CDY48578 | Canola | cytosol | 34.5 | 35.46 |
| CDX99649 | Canola | cytosol | 31.78 | 35.19 |
| Bra000817.1-P | Field mustard | plastid | 24.42 | 35.0 |
| TraesCS5B01G484300.1 | Wheat | cytosol | 27.52 | 34.98 |
| TraesCS5B01G484500.1 | Wheat | cytosol | 27.52 | 34.63 |
| Bra034230.1-P | Field mustard | cytosol | 35.27 | 34.6 |
| CDY15937 | Canola | cytosol | 31.01 | 34.33 |
| Bra030342.1-P | Field mustard | cytosol | 30.62 | 33.91 |
| TraesCS5B01G484100.1 | Wheat | cytosol | 29.07 | 33.48 |
| TraesCS6B01G310200.1 | Wheat | plastid | 46.51 | 33.24 |
| CDY21988 | Canola | cytosol | 19.38 | 33.11 |
| TraesCS1B01G041200.1 | Wheat | cytosol | 42.25 | 33.03 |
| CDX73787 | Canola | cytosol | 32.56 | 32.81 |
| TraesCS2B01G178700.1 | Wheat | plastid | 39.15 | 32.69 |
| CDY48580 | Canola | cytosol | 38.76 | 32.57 |
| AT4G05460.1 | Thale cress | cytosol | 37.98 | 32.45 |
| Bra034227.1-P | Field mustard | plastid | 39.92 | 32.39 |
| Bra034226.1-P | Field mustard | cytosol | 36.05 | 32.29 |
| AT4G03630.1 | Thale cress | cytosol | 27.52 | 32.27 |
| Bra034229.1-P | Field mustard | cytosol | 34.5 | 32.25 |
| TraesCS2B01G085400.1 | Wheat | cytosol | 39.92 | 32.19 |
| CDY48575 | Canola | plastid | 39.53 | 32.18 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 39.53 | 31.78 |
| CDY48576 | Canola | cytosol | 36.43 | 31.65 |
| CDY48574 | Canola | cytosol | 36.43 | 31.54 |
| TraesCS2B01G085200.1 | Wheat | cytosol | 39.53 | 31.48 |
| CDY21333 | Canola | nucleus, plastid | 35.66 | 31.29 |
| CDY21986 | Canola | cytosol, plastid | 36.05 | 31.0 |
| Bra034228.1-P | Field mustard | cytosol | 35.66 | 30.98 |
| AT4G05497.1 | Thale cress | plastid | 29.46 | 30.89 |
| CDY48577 | Canola | cytosol | 33.72 | 30.85 |
| TraesCS5B01G484200.1 | Wheat | cytosol, peroxisome, plastid | 22.87 | 30.57 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 30.62 | 30.5 |
| CDX86473 | Canola | cytosol | 30.23 | 30.47 |
| TraesCS5B01G484600.1 | Wheat | cytosol | 24.42 | 30.29 |
| Bra030690.1-P | Field mustard | cytosol | 32.95 | 30.25 |
| CDY15618 | Canola | cytosol | 32.95 | 30.25 |
| CDX90789 | Canola | cytosol | 35.27 | 30.23 |
| CDX77948 | Canola | cytosol | 19.77 | 30.18 |
| TraesCS7B01G480000.1 | Wheat | cytosol | 37.21 | 29.91 |
| PGSC0003DMT400016134 | Potato | cytosol | 33.33 | 29.66 |
| AT4G05490.1 | Thale cress | plastid | 35.27 | 29.64 |
| CDY59275 | Canola | plastid | 36.82 | 29.59 |
| Bra000816.1-P | Field mustard | plastid | 37.21 | 29.54 |
| TraesCS6B01G112100.1 | Wheat | mitochondrion | 39.92 | 29.43 |
| Solyc08g013780.1.1 | Tomato | cytosol | 13.95 | 29.27 |
| TraesCS2B01G385500.1 | Wheat | cytosol, plasma membrane, plastid | 25.19 | 29.02 |
| KRH21099 | Soybean | cytosol | 34.88 | 28.94 |
| CDY62000 | Canola | plastid | 36.82 | 28.88 |
| PGSC0003DMT400052833 | Potato | cytosol | 30.62 | 28.73 |
| TraesCS6B01G112000.1 | Wheat | mitochondrion | 38.37 | 28.7 |
| CDY10283 | Canola | cytosol | 34.88 | 28.66 |
| Solyc08g013800.2.1 | Tomato | cytosol | 32.56 | 28.57 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 33.33 | 28.1 |
| KRH11147 | Soybean | cytosol | 34.5 | 27.99 |
| Solyc08g006940.2.1 | Tomato | cytosol | 32.95 | 27.33 |
| CDY09910 | Canola | nucleus | 33.72 | 27.19 |
| AT4G05475.1 | Thale cress | cytosol | 32.17 | 26.86 |
| TraesCS5B01G284300.1 | Wheat | cytosol | 35.66 | 26.74 |
| PGSC0003DMT400015035 | Potato | cytosol | 31.4 | 26.47 |
| PGSC0003DMT400090939 | Potato | cytosol | 31.01 | 26.4 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 33.33 | 26.06 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.91 | 25.84 |
| Bra000723.1-P | Field mustard | cytosol | 15.12 | 25.66 |
| CDY06267 | Canola | nucleus | 34.5 | 25.57 |
| Bra031582.1-P | Field mustard | nucleus | 34.11 | 25.14 |
| AT5G52480.1 | Thale cress | cytosol | 23.26 | 24.9 |
| PGSC0003DMT400054358 | Potato | cytosol | 32.17 | 24.48 |
| CDY21990 | Canola | cytosol | 18.22 | 24.48 |
| TraesCS6B01G067500.1 | Wheat | cytosol, extracellular | 22.87 | 24.28 |
| PGSC0003DMT400015030 | Potato | cytosol | 27.52 | 23.99 |
| TraesCS3B01G452300.1 | Wheat | plastid | 39.15 | 21.72 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 37.21 | 21.57 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 39.15 | 21.35 |
| Solyc08g013820.2.1 | Tomato | cytosol | 30.62 | 21.24 |
| CDY21983 | Canola | cytosol | 22.48 | 20.49 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 22.09 | 18.81 |
| Bra034194.1-P | Field mustard | cytosol | 35.66 | 17.2 |
| Bra020205.1-P | Field mustard | plastid | 36.82 | 16.75 |
| CDY09154 | Canola | plastid | 36.82 | 16.75 |
| CDY22112 | Canola | cytosol | 31.01 | 16.6 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G443100.1 | EnsemblPlantsGene:TraesCS3B01G443100 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44078 | PANTHER:PTHR44078:SF3 | PFAM:PF12937 | PFscan:PS50181 | SEG:seg |
| SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3B:+:683678409..683680559
Molecular Weight (calculated)
29401.4 Da
IEP (calculated)
6.041
GRAVY (calculated)
-0.211
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSSPSFVP VEEEMRNWAE LPLDAISTIL RKLDHVNILM GAGQVCRSWR GAARDEPELW RRINMLGHAD LSPELNLHGM AQAAVRRSAG RCEAFWGEYT
101: DDHDFLLFLA DQAPSLKSHR LISRYNFDVL KEMIVKFPLL EELELSLCSD VGESGVFGVV GKACPQLKHF RLNKDVFYDF EACDNDRDDE AMGIAIMHEL
201: RSLQLFANRL TNKGLTAILD NCRHLESLDI RHCFNVSMDN TLRAKCDRIS TLRLILPR
101: DDHDFLLFLA DQAPSLKSHR LISRYNFDVL KEMIVKFPLL EELELSLCSD VGESGVFGVV GKACPQLKHF RLNKDVFYDF EACDNDRDDE AMGIAIMHEL
201: RSLQLFANRL TNKGLTAILD NCRHLESLDI RHCFNVSMDN TLRAKCDRIS TLRLILPR
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.