Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G457400.1 | |
| TraesCS3B01G497300.1 | |
| TraesCS3D01G450200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | TraesCS3A01G457400.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3B01G497300.1 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | TraesCS3D01G450200.1 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G444000.1 | Wheat | nucleus | 95.14 | 95.14 |
| TraesCS3D01G405300.1 | Wheat | nucleus | 94.57 | 94.57 |
| TraesCS3A01G411000.1 | Wheat | nucleus | 82.86 | 85.55 |
| TraesCS7A01G304900.1 | Wheat | mitochondrion, nucleus | 58.57 | 76.78 |
| EES14679 | Sorghum | nucleus | 62.86 | 63.95 |
| TraesCS2A01G313400.1 | Wheat | cytosol | 43.71 | 49.2 |
| TraesCS2A01G119000.1 | Wheat | nucleus | 60.29 | 48.84 |
| TraesCS7A01G193100.1 | Wheat | cytosol | 40.86 | 46.43 |
| TraesCS1A01G128000.1 | Wheat | cytosol | 30.86 | 46.35 |
| TraesCS2A01G071400.1 | Wheat | cytosol | 12.57 | 41.51 |
| TraesCS1A01G033100.1 | Wheat | cytosol | 38.86 | 41.46 |
| Bra000817.1-P | Field mustard | plastid | 20.57 | 40.0 |
| TraesCS7A01G484100.1 | Wheat | cytosol | 11.14 | 39.39 |
| CDX99649 | Canola | cytosol | 26.0 | 39.06 |
| TraesCS5A01G471800.1 | Wheat | cytosol | 22.57 | 38.92 |
| AT4G03630.1 | Thale cress | cytosol | 24.29 | 38.64 |
| Bra030342.1-P | Field mustard | cytosol | 25.71 | 38.63 |
| CDY15937 | Canola | cytosol | 25.71 | 38.63 |
| CDY21989 | Canola | cytosol | 8.86 | 38.27 |
| TraesCS5A01G075400.1 | Wheat | cytosol | 33.43 | 38.24 |
| CDY48580 | Canola | cytosol | 33.14 | 37.78 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 34.57 | 37.69 |
| AT4G05460.1 | Thale cress | cytosol | 32.0 | 37.09 |
| CDY48574 | Canola | cytosol | 31.43 | 36.91 |
| Bra034230.1-P | Field mustard | cytosol | 27.43 | 36.5 |
| Bra034227.1-P | Field mustard | plastid | 33.14 | 36.48 |
| CDY21333 | Canola | nucleus, plastid | 30.57 | 36.39 |
| CDX73787 | Canola | cytosol | 26.57 | 36.33 |
| CDY48576 | Canola | cytosol | 30.57 | 36.03 |
| CDY48575 | Canola | plastid | 32.57 | 35.96 |
| TraesCS2A01G153600.1 | Wheat | cytosol, plastid | 31.71 | 35.92 |
| CDY48578 | Canola | cytosol | 25.71 | 35.86 |
| Bra034226.1-P | Field mustard | cytosol | 29.43 | 35.76 |
| CDY21988 | Canola | cytosol | 15.43 | 35.76 |
| Bra034229.1-P | Field mustard | cytosol | 28.0 | 35.51 |
| Bra034228.1-P | Field mustard | cytosol | 30.0 | 35.35 |
| CDY59275 | Canola | plastid | 32.0 | 34.89 |
| CDX90789 | Canola | cytosol | 30.0 | 34.88 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 25.71 | 34.75 |
| AT4G05490.1 | Thale cress | plastid | 30.29 | 34.53 |
| Bra030690.1-P | Field mustard | cytosol | 27.71 | 34.52 |
| CDY15618 | Canola | cytosol | 27.71 | 34.52 |
| Bra000816.1-P | Field mustard | plastid | 32.0 | 34.46 |
| CDY21986 | Canola | cytosol, plastid | 29.43 | 34.33 |
| KRH21099 | Soybean | cytosol | 30.29 | 34.08 |
| TraesCS6A01G089600.1 | Wheat | cytosol, mitochondrion | 33.14 | 34.02 |
| CDX77948 | Canola | cytosol | 16.29 | 33.73 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.57 | 33.71 |
| CDX86473 | Canola | cytosol | 24.57 | 33.59 |
| CDY62000 | Canola | plastid | 31.43 | 33.43 |
| CDY48577 | Canola | cytosol | 26.86 | 33.33 |
| AT4G05497.1 | Thale cress | plastid | 23.43 | 33.33 |
| PGSC0003DMT400016134 | Potato | cytosol | 27.43 | 33.1 |
| TraesCS6A01G090000.1 | Wheat | mitochondrion | 32.86 | 32.58 |
| PGSC0003DMT400052833 | Potato | cytosol | 25.43 | 32.36 |
| AT4G05475.1 | Thale cress | cytosol | 28.57 | 32.36 |
| CDY10283 | Canola | cytosol | 28.86 | 32.17 |
| KRH11147 | Soybean | cytosol | 29.14 | 32.08 |
| CDY09910 | Canola | nucleus | 29.14 | 31.88 |
| Solyc08g013780.1.1 | Tomato | cytosol | 11.14 | 31.71 |
| Bra000723.1-P | Field mustard | cytosol | 13.71 | 31.58 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 27.43 | 31.37 |
| Solyc08g006940.2.1 | Tomato | cytosol | 27.43 | 30.87 |
| PGSC0003DMT400090939 | Potato | cytosol | 26.57 | 30.69 |
| Solyc08g013800.2.1 | Tomato | cytosol | 25.71 | 30.61 |
| CDY06267 | Canola | nucleus | 30.0 | 30.17 |
| TraesCS6A01G051000.1 | Wheat | plastid | 32.0 | 30.11 |
| Bra031582.1-P | Field mustard | nucleus | 29.71 | 29.71 |
| AT5G52480.1 | Thale cress | cytosol | 20.29 | 29.46 |
| PGSC0003DMT400015035 | Potato | cytosol | 25.14 | 28.76 |
| PGSC0003DMT400015030 | Potato | cytosol | 22.29 | 26.35 |
| PGSC0003DMT400054358 | Potato | cytosol | 25.43 | 26.25 |
| CDY21983 | Canola | cytosol | 20.86 | 25.8 |
| CDY21990 | Canola | cytosol | 14.0 | 25.52 |
| Solyc08g013820.2.1 | Tomato | cytosol | 24.86 | 23.39 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 32.86 | 23.19 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 20.0 | 23.1 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 25.14 | 22.51 |
| Bra020205.1-P | Field mustard | plastid | 32.0 | 19.75 |
| CDY09154 | Canola | plastid | 32.0 | 19.75 |
| Bra034194.1-P | Field mustard | cytosol | 29.71 | 19.44 |
| CDY22112 | Canola | cytosol | 24.57 | 17.84 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF12937 | PFAM:PF13516 | PFscan:PS50181 | PANTHER:PTHR44078 |
| PANTHER:PTHR44078:SF3 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | EnsemblPlantsGene:TraesCS3A01G410700 | EnsemblPlants:TraesCS3A01G410700.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:+:654781986..654784611
Molecular Weight (calculated)
39619.8 Da
IEP (calculated)
4.645
GRAVY (calculated)
-0.428
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLSSSSRRR RGGRGGRRGR NAPTAPAAAD ETETRNWAEL PLDAISAILH KLDHVDILMG AGQLCRSWRG AARDEPELWR RINMLGHADL EHELNFPGMA
101: QAAVRRSAGR CEAFWCEYAA DHDFLLYLAD QAPSLKSLRL ISCYDVFDDG LTEAIMKFPL LEELELSVCP NMDDSGVFGV IGKACPQLKR FRLCKDVFFD
201: YEASEQEKDE EALGIATMHE LRSLQLFGNS LTNKGLTAIL DNCRHLESLD IRHCFNVTMD DALRAKCARI STLRLPNDST DDYDFIVKSP IWRNSESFLG
301: DYVGSDSDYE LGSDDYDDYC DPSRYLDGVY EDELNDEARM LLRGMRMLMK
101: QAAVRRSAGR CEAFWCEYAA DHDFLLYLAD QAPSLKSLRL ISCYDVFDDG LTEAIMKFPL LEELELSVCP NMDDSGVFGV IGKACPQLKR FRLCKDVFFD
201: YEASEQEKDE EALGIATMHE LRSLQLFGNS LTNKGLTAIL DNCRHLESLD IRHCFNVTMD DALRAKCARI STLRLPNDST DDYDFIVKSP IWRNSESFLG
301: DYVGSDSDYE LGSDDYDDYC DPSRYLDGVY EDELNDEARM LLRGMRMLMK
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.