Factsheet for TraesCSU01G016500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G05460.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT4G05460.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G090000.1	Wheat	mitochondrion	96.05	96.32
TraesCS6B01G112100.1	Wheat	mitochondrion	94.07	95.14
HORVU6Hr1G014660.1	Barley	cytosol	47.18	78.4
TraesCSU01G016600.1	Wheat	mitochondrion	42.09	55.19
TraesCS7D01G203500.1	Wheat	plastid	44.92	46.76
TraesCS7D01G203600.1	Wheat	plastid	44.07	45.75
CDY21988	Canola	cytosol	14.69	34.44
Bra030342.1-P	Field mustard	cytosol	21.47	32.62
CDY15937	Canola	cytosol	21.19	32.19
CDX99649	Canola	cytosol	21.19	32.19
Zm00001d046526_P001	Maize	plastid	24.58	30.74
Bra034230.1-P	Field mustard	cytosol	22.6	30.42
Zm00001d046527_P001	Maize	extracellular, mitochondrion, nucleus	18.93	30.18
CDY48580	Canola	cytosol	25.42	29.32
Bra034228.1-P	Field mustard	cytosol	24.58	29.29
CDY48576	Canola	cytosol	24.58	29.29
CDY48575	Canola	plastid	25.99	29.02
Bra034227.1-P	Field mustard	plastid	25.99	28.93
Bra034229.1-P	Field mustard	cytosol	22.32	28.62
CDY21986	Canola	cytosol, plastid	24.01	28.33
CDY21333	Canola	nucleus, plastid	23.45	28.23
PGSC0003DMT400058969	Potato	cytosol	7.06	28.09
AT4G05497.1	Thale cress	plastid	19.49	28.05
CDY48578	Canola	cytosol	19.77	27.89
Bra000817.1-P	Field mustard	plastid	14.12	27.78
PGSC0003DMT400015035	Potato	cytosol	23.73	27.45
CDY48577	Canola	cytosol	21.75	27.3
Solyc08g013800.2.1	Tomato	cytosol	22.6	27.21
CDY21989	Canola	cytosol	6.21	27.16
AT4G05460.1	Thale cress	cytosol	23.16	27.15
Bra030690.1-P	Field mustard	cytosol	21.47	27.05
KRH21099	Soybean	cytosol	23.73	27.01
AT4G03630.1	Thale cress	cytosol	16.67	26.82
KRH11147	Soybean	cytosol	24.01	26.73
CDY15618	Canola	cytosol	21.19	26.69
CDX77948	Canola	cytosol	12.71	26.63
CDX86473	Canola	cytosol	19.21	26.56
CDX90789	Canola	cytosol	22.03	25.91
Bra034231.1-P	Field mustard	cytosol, plastid	18.93	25.87
Bra000816.1-P	Field mustard	plastid	23.73	25.85
CDY48574	Canola	cytosol	21.75	25.84
Bra034226.1-P	Field mustard	cytosol	20.9	25.69
CDY09910	Canola	nucleus	23.16	25.62
VIT_10s0003g04300.t01	Wine grape	cytosol	23.16	25.55
PGSC0003DMT400016134	Potato	cytosol	20.9	25.52
AT4G05490.1	Thale cress	plastid	22.03	25.41
AT5G52480.1	Thale cress	cytosol	17.23	25.31
AT4G05475.1	Thale cress	cytosol	22.03	25.24
Solyc08g006940.2.1	Tomato	cytosol	22.03	25.08
PGSC0003DMT400015030	Potato	cytosol	20.9	25.0
CDX73787	Canola	cytosol	18.08	25.0
CDY62000	Canola	plastid	23.16	24.92
CDY59275	Canola	plastid	22.6	24.92
AT4G05470.1	Thale cress	cytosol, plastid	21.47	24.84
PGSC0003DMT400052833	Potato	cytosol	19.21	24.73
PGSC0003DMT400090939	Potato	cytosol	20.62	24.09
PGSC0003DMT400054358	Potato	cytosol	22.6	23.6
CDY21990	Canola	cytosol	12.71	23.44
CDY06267	Canola	nucleus	22.88	23.28
CDY10283	Canola	cytosol	20.34	22.93
Bra031582.1-P	Field mustard	nucleus	22.6	22.86
Solyc08g013780.1.1	Tomato	cytosol	7.91	22.76
Solyc08g013820.2.1	Tomato	cytosol	23.16	22.04
Bra000723.1-P	Field mustard	cytosol	8.47	19.74
Solyc08g006920.1.1	Tomato	cytosol, mitochondrion, nucleus	14.41	16.83
CDY21983	Canola	cytosol	13.28	16.61
CDY22112	Canola	cytosol	20.9	15.35
Bra034194.1-P	Field mustard	cytosol	22.88	15.14
Bra020205.1-P	Field mustard	plastid	23.45	14.64
CDY09154	Canola	plastid	23.45	14.64

Protein Annotations

EnsemblPlants:TraesCSU01G016500.1	EnsemblPlantsGene:TraesCSU01G016500	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR44078	PANTHER:PTHR44078:SF3	PFAM:PF12937	PFscan:PS50181	SEG:seg	SUPFAM:SSF52047
SUPFAM:SSF81383	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:18917777..18919480

Molecular Weight (calculated)

41150.3 Da

IEP (calculated)

7.572

GRAVY (calculated)

-0.415

Length

354 amino acids

Sequence
(BLAST)

001: MPSPPPAAAP RSRRYSKRRA RTFHVTVFKY TPVPLPERDW AELHPDLISR IFRRLDQAEL LLGGVTGVCR SWRRVAREEP ELWRRIDLSG GLWYAPGSYP
101: PMFNLETRSM VRKALRLSAG QCEALVCEHV DDDTLLFLAE RAHSLKSLHL VVTLISDKGF AKAIKMLPLL EELEITLLSK TYTLKLVEIA ARACPLVKHF
201: RLVTGRYYEN GNEVAFAVAR MHKLRSLHLV GFILDKEGLT AILNNCHDLK YLNMRDCGSP MDYNLRARFS RITFDEHEYW SDYYNDTHYA YYRFKPTLCD
301: CCVHVPYSKY DDDDYEAYHY NLGDDGDGDD VDDADLDKHE KILDIKSMRR YLSR

Best Arabidopsis Sequence Match ( AT4G05460.1 )
(BLAST)

001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF

Arabidopsis Description

SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.