Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Os01t0935300-02 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | Os05t0193900-00 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0193200-00 | Rice | cytosol | 16.52 | 47.83 |
| Os08t0193500-00 | Rice | cytosol | 27.63 | 42.01 |
| KXG24670 | Sorghum | cytosol | 39.64 | 41.64 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 41.14 | 41.52 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 40.24 | 38.51 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 44.74 | 31.84 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 45.05 | 31.65 |
| TraesCS3B01G452300.1 | Wheat | plastid | 44.14 | 31.61 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 41.44 | 31.51 |
| PGSC0003DMT400058969 | Potato | cytosol | 8.41 | 31.46 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 41.74 | 31.24 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 43.54 | 30.66 |
| CDY21989 | Canola | cytosol | 7.21 | 29.63 |
| Os08t0194350-00 | Rice | cytosol | 23.42 | 29.32 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 34.23 | 29.16 |
| Bra034230.1-P | Field mustard | cytosol | 22.82 | 28.9 |
| Bra000817.1-P | Field mustard | plastid | 15.62 | 28.89 |
| AT4G03630.1 | Thale cress | cytosol | 18.92 | 28.64 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 42.34 | 28.43 |
| CDY48578 | Canola | cytosol | 21.02 | 27.89 |
| AT5G52480.1 | Thale cress | cytosol | 20.12 | 27.8 |
| CDX73787 | Canola | cytosol | 21.32 | 27.73 |
| CDX99649 | Canola | cytosol | 19.22 | 27.47 |
| Bra030342.1-P | Field mustard | cytosol | 18.92 | 27.04 |
| CDY15937 | Canola | cytosol | 18.32 | 26.18 |
| Os02t0317500-01 | Rice | cytosol | 25.53 | 25.76 |
| CDY48574 | Canola | cytosol | 22.82 | 25.5 |
| KRH11147 | Soybean | cytosol | 24.32 | 25.47 |
| KRH21099 | Soybean | cytosol | 23.72 | 25.4 |
| Solyc08g013780.1.1 | Tomato | cytosol | 9.31 | 25.2 |
| CDY21988 | Canola | cytosol | 11.41 | 25.17 |
| CDY48580 | Canola | cytosol | 23.12 | 25.08 |
| Bra034226.1-P | Field mustard | cytosol | 21.62 | 25.0 |
| Bra034227.1-P | Field mustard | plastid | 23.72 | 24.84 |
| CDY48575 | Canola | plastid | 23.42 | 24.61 |
| Os02t0317300-01 | Rice | cytosol | 24.02 | 24.39 |
| Bra034229.1-P | Field mustard | cytosol | 20.12 | 24.28 |
| CDY48576 | Canola | cytosol | 21.32 | 23.91 |
| AT4G05460.1 | Thale cress | cytosol | 21.62 | 23.84 |
| CDY48577 | Canola | cytosol | 19.82 | 23.4 |
| Os11t0637300-00 | Rice | cytosol | 8.41 | 23.33 |
| AT4G05497.1 | Thale cress | plastid | 17.12 | 23.17 |
| CDY21333 | Canola | nucleus, plastid | 20.42 | 23.13 |
| AT4G05490.1 | Thale cress | plastid | 21.32 | 23.13 |
| PGSC0003DMT400016134 | Potato | cytosol | 20.12 | 23.1 |
| Bra000723.1-P | Field mustard | cytosol | 10.51 | 23.03 |
| CDX90789 | Canola | cytosol | 20.72 | 22.92 |
| Bra034228.1-P | Field mustard | cytosol | 20.42 | 22.9 |
| Bra030690.1-P | Field mustard | cytosol | 19.22 | 22.78 |
| CDY15618 | Canola | cytosol | 19.22 | 22.78 |
| CDY21986 | Canola | cytosol, plastid | 20.42 | 22.67 |
| CDX86473 | Canola | cytosol | 17.42 | 22.66 |
| CDY10283 | Canola | cytosol | 21.32 | 22.61 |
| CDY09910 | Canola | nucleus | 21.62 | 22.5 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 21.62 | 22.43 |
| PGSC0003DMT400015035 | Potato | cytosol | 20.42 | 22.22 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 17.12 | 22.01 |
| CDX77948 | Canola | cytosol | 11.11 | 21.89 |
| CDY62000 | Canola | plastid | 21.62 | 21.88 |
| PGSC0003DMT400052833 | Potato | cytosol | 18.02 | 21.82 |
| Solyc08g013800.2.1 | Tomato | cytosol | 19.22 | 21.77 |
| AT4G05475.1 | Thale cress | cytosol | 20.12 | 21.68 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 19.82 | 21.57 |
| CDY06267 | Canola | nucleus | 22.22 | 21.26 |
| Bra000816.1-P | Field mustard | plastid | 20.72 | 21.23 |
| Bra031582.1-P | Field mustard | nucleus | 22.22 | 21.14 |
| CDY59275 | Canola | plastid | 19.82 | 20.56 |
| Solyc08g006940.2.1 | Tomato | cytosol | 18.92 | 20.26 |
| PGSC0003DMT400015030 | Potato | cytosol | 17.72 | 19.93 |
| PGSC0003DMT400090939 | Potato | cytosol | 18.02 | 19.8 |
| PGSC0003DMT400054358 | Potato | cytosol | 20.12 | 19.76 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 20.12 | 19.36 |
| Os08t0193900-01 | Rice | nucleus | 22.82 | 19.19 |
| Os08t0191300-00 | Rice | cytosol, golgi | 14.41 | 18.68 |
| CDY21983 | Canola | cytosol | 15.62 | 18.37 |
| Solyc08g013820.2.1 | Tomato | cytosol | 20.42 | 18.28 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 14.41 | 15.84 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 11.71 | 15.6 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 13.81 | 15.23 |
| CDY21990 | Canola | cytosol | 7.81 | 13.54 |
| Bra034194.1-P | Field mustard | cytosol | 20.72 | 12.9 |
| CDY22112 | Canola | cytosol | 18.02 | 12.45 |
| Bra020205.1-P | Field mustard | plastid | 19.52 | 11.46 |
| CDY09154 | Canola | plastid | 19.52 | 11.46 |
| Os08t0196200-01 | Rice | cytosol | 4.5 | 5.47 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 0.3 | 0.26 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:107276429 | Gene3D:3.80.10.10 | MapMan:35.1 | ProteinID:BAD05609.1 | ProteinID:BAT04194.1 |
| ProteinID:EAZ41788.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | EnsemblPlantsGene:Os08g0193300 | EnsemblPlants:Os08t0193300-00 | PFAM:PF00646 |
| PANTHER:PTHR44078 | UniProt:Q6Z1B6 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000022F2A8 | RefSeq:XP_015649071.1 |
| SEG:seg | : | : | : | : | : |
Description
F-box protein 410Hypothetical conserved gene. (Os08t0193300-00)
Coordinates
chr8:-:5446749..5448654
Molecular Weight (calculated)
37846.3 Da
IEP (calculated)
6.886
GRAVY (calculated)
0.033
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAVPSPLPD TDSDRDWSEL PVDALSAIFT KLGTVEILMG ASFVCHSWLA ASKSPELWRF VDMTRHKVIF SKRTGILCAM AKAAIDRSDG QIESFWAQKF
101: VTGELLDYIV RRASTLKSIR LVACTFIQWQ SLAMLAAKCP LLEEIECSYH KMPADFFKCV GRVRPNLKRL RVHMHYFDQD ELENELIKHV LEEGGEVFEE
201: PFEQREARRN ADAFAIAENM HELRLLQIAG HNLTEIGVRA ILDGCPHLEC LDLSSCHDIY VDGQLQARFA MIRHVRLPGL MMVTAQISVP SVRGSLWLIF
301: SEVSLALCLR RWRWGMVPMA MTKSLRPLTP VST
101: VTGELLDYIV RRASTLKSIR LVACTFIQWQ SLAMLAAKCP LLEEIECSYH KMPADFFKCV GRVRPNLKRL RVHMHYFDQD ELENELIKHV LEEGGEVFEE
201: PFEQREARRN ADAFAIAENM HELRLLQIAG HNLTEIGVRA ILDGCPHLEC LDLSSCHDIY VDGQLQARFA MIRHVRLPGL MMVTAQISVP SVRGSLWLIF
301: SEVSLALCLR RWRWGMVPMA MTKSLRPLTP VST
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.