Subcellular Localization
min:
: max
Winner_takes_all: vacuole, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Os01t0935300-02 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | Os05t0193900-00 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G119000.1 | Wheat | nucleus | 5.03 | 4.4 |
| EES14677 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 5.03 | 4.04 |
| Os08t0193900-01 | Rice | nucleus | 4.23 | 4.04 |
| Bra000817.1-P | Field mustard | plastid | 1.32 | 2.78 |
| Os11t0637300-00 | Rice | cytosol | 0.79 | 2.5 |
| HORVU2Hr1G020540.2 | Barley | cytosol | 1.85 | 2.49 |
| Os02t0317300-01 | Rice | cytosol | 1.59 | 1.83 |
| Os02t0317500-01 | Rice | cytosol | 1.59 | 1.82 |
| Bra034229.1-P | Field mustard | cytosol | 1.32 | 1.81 |
| CDY48577 | Canola | cytosol | 1.32 | 1.77 |
| Os08t0193200-00 | Rice | cytosol | 0.53 | 1.74 |
| CDY21333 | Canola | nucleus, plastid | 1.32 | 1.7 |
| Solyc08g013800.2.1 | Tomato | cytosol | 1.32 | 1.7 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 1.32 | 1.66 |
| AT4G05490.1 | Thale cress | plastid | 1.32 | 1.63 |
| AT4G05497.1 | Thale cress | plastid | 1.06 | 1.63 |
| CDY59275 | Canola | plastid | 1.32 | 1.56 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 1.06 | 1.54 |
| Bra000816.1-P | Field mustard | plastid | 1.32 | 1.54 |
| CDY62000 | Canola | plastid | 1.32 | 1.52 |
| Bra034228.1-P | Field mustard | cytosol | 1.06 | 1.35 |
| CDY48576 | Canola | cytosol | 1.06 | 1.35 |
| CDY21986 | Canola | cytosol, plastid | 1.06 | 1.33 |
| CDX90789 | Canola | cytosol | 1.06 | 1.33 |
| AT4G05460.1 | Thale cress | cytosol | 1.06 | 1.32 |
| Bra000723.1-P | Field mustard | cytosol | 0.53 | 1.32 |
| CDY48580 | Canola | cytosol | 1.06 | 1.3 |
| CDY10283 | Canola | cytosol | 1.06 | 1.27 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 1.06 | 1.25 |
| CDY21989 | Canola | cytosol | 0.26 | 1.23 |
| CDY48578 | Canola | cytosol | 0.79 | 1.2 |
| Os08t0194350-00 | Rice | cytosol | 0.79 | 1.13 |
| Bra034194.1-P | Field mustard | cytosol | 1.59 | 1.12 |
| CDY21983 | Canola | cytosol | 0.79 | 1.06 |
| Bra034226.1-P | Field mustard | cytosol | 0.79 | 1.04 |
| CDY21990 | Canola | cytosol | 0.53 | 1.04 |
| PGSC0003DMT400016134 | Potato | cytosol | 0.79 | 1.03 |
| PGSC0003DMT400015030 | Potato | cytosol | 0.79 | 1.01 |
| CDY48574 | Canola | cytosol | 0.79 | 1.01 |
| AT4G05475.1 | Thale cress | cytosol | 0.79 | 0.97 |
| KRH21099 | Soybean | cytosol | 0.79 | 0.96 |
| Solyc08g006940.2.1 | Tomato | cytosol | 0.79 | 0.96 |
| CDY48575 | Canola | plastid | 0.79 | 0.95 |
| KRH11147 | Soybean | cytosol | 0.79 | 0.94 |
| Bra034227.1-P | Field mustard | plastid | 0.79 | 0.94 |
| CDY09910 | Canola | nucleus | 0.79 | 0.94 |
| Os08t0193500-00 | Rice | cytosol | 0.53 | 0.91 |
| AT4G03630.1 | Thale cress | cytosol | 0.53 | 0.91 |
| CDY09154 | Canola | plastid | 1.32 | 0.88 |
| Bra020205.1-P | Field mustard | plastid | 1.32 | 0.88 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 0.79 | 0.87 |
| CDY06267 | Canola | nucleus | 0.79 | 0.86 |
| Bra031582.1-P | Field mustard | nucleus | 0.79 | 0.86 |
| Solyc08g013780.1.1 | Tomato | cytosol | 0.26 | 0.81 |
| Solyc08g013820.2.1 | Tomato | cytosol | 0.79 | 0.81 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 0.53 | 0.8 |
| Bra034230.1-P | Field mustard | cytosol | 0.53 | 0.76 |
| CDY15618 | Canola | cytosol | 0.53 | 0.71 |
| Bra030690.1-P | Field mustard | cytosol | 0.53 | 0.71 |
| CDY21988 | Canola | cytosol | 0.26 | 0.66 |
| PGSC0003DMT400090939 | Potato | cytosol | 0.53 | 0.66 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 0.53 | 0.65 |
| PGSC0003DMT400015035 | Potato | cytosol | 0.53 | 0.65 |
| CDY22112 | Canola | cytosol | 0.79 | 0.62 |
| CDX77948 | Canola | cytosol | 0.26 | 0.59 |
| PGSC0003DMT400054358 | Potato | cytosol | 0.53 | 0.59 |
| CDY15937 | Canola | cytosol | 0.26 | 0.43 |
| Bra030342.1-P | Field mustard | cytosol | 0.26 | 0.43 |
| CDX99649 | Canola | cytosol | 0.26 | 0.43 |
| AT5G52480.1 | Thale cress | cytosol | 0.26 | 0.41 |
| CDX86473 | Canola | cytosol | 0.26 | 0.39 |
| CDX73787 | Canola | cytosol | 0.26 | 0.39 |
| Os08t0191300-00 | Rice | cytosol, golgi | 0.26 | 0.39 |
| PGSC0003DMT400052833 | Potato | cytosol | 0.26 | 0.36 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 0.26 | 0.33 |
| Os08t0193300-00 | Rice | cytosol | 0.26 | 0.3 |
| PGSC0003DMT400058969 | Potato | cytosol | 0.0 | 0.0 |
| Os08t0196200-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os08t0194000-00 | EnsemblPlantsGene:Os08g0194000 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | PANTHER:PTHR44078 | ProteinID:BAT04200.1 | SEG:seg | SUPFAM:SSF52047 | SUPFAM:SSF81383 |
| UniParc:UPI0003938B79 | UniProt:A0A0P0XCK5 | MapMan:35.1 | : | : | : |
Description
F-box protein 414F-box domain, Skp2-like domain containing protein. (Os08t0194000-00)
Coordinates
chr8:-:5479726..5481493
Molecular Weight (calculated)
43096.4 Da
IEP (calculated)
4.231
GRAVY (calculated)
-0.365
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MSADLSNHFQ VFFVPLAMEV DSIRLPAPDE RDWSELPVDA LSVFFAKIGA IEILMGAGLV CHSWLEAAKV PDLWRSLDMT RHKVIFKKTI GVMCAMARVA
101: VDRSAGKLES FWAQNFVTSD LLKYIGERTT SLKSIRLIAY TRVPWKELVN LAAKSPLLED LEHSYRDSLE EFFEHLGCKC PQLRCLRVNN DGFVYDDAKY
201: DLMDQVIGDH DDDDDEEDEL EYGPWDWPSN NNGVAFAIAE SMHELRILQI TNNTLTNAGV LAILDSCNNV SPNDQLRARW ASLRHFNLSE GCRWSNFKEL
301: RVIGEDEGQE FRPEDELSDG LSKEFCYPSK DAGMGDGWDD VYWDDISLPS DDGRDPDLSN VNCDDITQYT YLHDYYSL
101: VDRSAGKLES FWAQNFVTSD LLKYIGERTT SLKSIRLIAY TRVPWKELVN LAAKSPLLED LEHSYRDSLE EFFEHLGCKC PQLRCLRVNN DGFVYDDAKY
201: DLMDQVIGDH DDDDDEEDEL EYGPWDWPSN NNGVAFAIAE SMHELRILQI TNNTLTNAGV LAILDSCNNV SPNDQLRARW ASLRHFNLSE GCRWSNFKEL
301: RVIGEDEGQE FRPEDELSDG LSKEFCYPSK DAGMGDGWDD VYWDDISLPS DDGRDPDLSN VNCDDITQYT YLHDYYSL
001: MASSSSPPAA MEVGESTNWT ELPPELTSAI LHRLGAIEIL ENAQKVCRSW RRVCKDPSMW RKIDMHNLGD LDDMDYNLEI MCRHAVDRSQ GGLVDIGIWY
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
101: FGTVDLLNYI AHRSSNLRSL RLIRCSQITD DGFVEAVVKL PLEELELSYC SFSVESLRVV GQCCLNMKTL KLNKHPQKEN DDDALAIAET MPKLRHLQLC
201: GNGLSDTGLN AILDNCSNLE HLDLRRCFNV NLVGDLQKRC FESVKVVRHP NDSIHDIDIG SSEDEDPYDF SDIDLMSGDD DFEGYYDFSG ASDFSDYDQF
301: DF
Arabidopsis Description
SKIP19F-box protein SKIP19 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0U9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.