Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0935300-02 | |
| Os05t0193900-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G05460.1 | Os01t0935300-02 | AT4G02570.1 | 12795696 |
| AT4G05460.1 | Os05t0193900-00 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0637300-00 | Rice | cytosol | 50.43 | 48.33 |
| Os08t0193500-00 | Rice | cytosol | 72.17 | 37.9 |
| KXG24670 | Sorghum | cytosol | 68.7 | 24.92 |
| Os08t0195000-00 | Rice | cytosol, peroxisome, plastid | 49.57 | 22.8 |
| Os08t0194350-00 | Rice | cytosol | 50.43 | 21.8 |
| TraesCS3A01G417500.1 | Wheat | cytosol | 70.43 | 20.72 |
| CDX77948 | Canola | cytosol | 29.57 | 20.12 |
| TraesCS3D01G413100.1 | Wheat | cytosol, endoplasmic reticulum, vacuole | 60.87 | 20.11 |
| TraesCS3B01G452600.1 | Wheat | extracellular | 57.39 | 20.0 |
| CDY21988 | Canola | cytosol | 25.22 | 19.21 |
| TraesCS3B01G452400.1 | Wheat | cytosol | 70.43 | 18.2 |
| TraesCS3D01G413000.1 | Wheat | cytosol | 67.83 | 17.81 |
| TraesCS3D01G412900.1 | Wheat | cytosol, plastid | 72.17 | 17.73 |
| TraesCS3B01G452300.1 | Wheat | plastid | 71.3 | 17.63 |
| TraesCS3B01G452500.1 | Wheat | cytosol | 72.17 | 17.55 |
| HORVU3Hr1G092720.1 | Barley | cytosol, mitochondrion, nucleus | 69.57 | 16.88 |
| CDY21990 | Canola | cytosol | 27.83 | 16.67 |
| TraesCS3A01G417400.1 | Wheat | cytosol | 71.3 | 16.53 |
| Os08t0193300-00 | Rice | cytosol | 47.83 | 16.52 |
| Os02t0317500-01 | Rice | cytosol | 46.09 | 16.06 |
| Os02t0317300-01 | Rice | cytosol | 43.48 | 15.24 |
| Os08t0195900-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 39.13 | 14.9 |
| Bra034231.1-P | Field mustard | cytosol, plastid | 29.57 | 13.13 |
| CDX73787 | Canola | cytosol | 28.7 | 12.89 |
| Os08t0196200-01 | Rice | cytosol | 30.43 | 12.77 |
| KRH21099 | Soybean | cytosol | 33.91 | 12.54 |
| CDX99649 | Canola | cytosol | 25.22 | 12.45 |
| CDY48578 | Canola | cytosol | 26.96 | 12.35 |
| KRH11147 | Soybean | cytosol | 33.91 | 12.26 |
| AT4G05460.1 | Thale cress | cytosol | 32.17 | 12.25 |
| VIT_10s0003g04300.t01 | Wine grape | cytosol | 33.04 | 11.84 |
| AT4G05497.1 | Thale cress | plastid | 25.22 | 11.79 |
| PGSC0003DMT400016134 | Potato | cytosol | 29.57 | 11.72 |
| Bra034229.1-P | Field mustard | cytosol | 27.83 | 11.59 |
| CDY15937 | Canola | cytosol | 23.48 | 11.59 |
| Bra030342.1-P | Field mustard | cytosol | 23.48 | 11.59 |
| Bra000816.1-P | Field mustard | plastid | 32.17 | 11.38 |
| CDY48577 | Canola | cytosol | 27.83 | 11.35 |
| CDY62000 | Canola | plastid | 32.17 | 11.25 |
| CDY21333 | Canola | nucleus, plastid | 28.7 | 11.22 |
| AT4G05490.1 | Thale cress | plastid | 29.57 | 11.07 |
| CDY48580 | Canola | cytosol | 29.57 | 11.07 |
| Bra034230.1-P | Field mustard | cytosol | 25.22 | 11.03 |
| Bra034227.1-P | Field mustard | plastid | 30.43 | 11.01 |
| CDY59275 | Canola | plastid | 30.43 | 10.9 |
| Os08t0193900-01 | Rice | nucleus | 37.39 | 10.86 |
| CDY48576 | Canola | cytosol | 27.83 | 10.77 |
| Bra034226.1-P | Field mustard | cytosol | 26.96 | 10.76 |
| CDY48575 | Canola | plastid | 29.57 | 10.73 |
| CDY21986 | Canola | cytosol, plastid | 27.83 | 10.67 |
| CDY10283 | Canola | cytosol | 28.7 | 10.51 |
| PGSC0003DMT400015035 | Potato | cytosol | 27.83 | 10.46 |
| Os08t0195800-00 | Rice | cytosol, mitochondrion, nucleus | 31.3 | 10.4 |
| CDY48574 | Canola | cytosol | 26.96 | 10.4 |
| CDY15618 | Canola | cytosol | 25.22 | 10.32 |
| Bra030690.1-P | Field mustard | cytosol | 25.22 | 10.32 |
| CDX90789 | Canola | cytosol | 26.96 | 10.3 |
| Solyc08g013800.2.1 | Tomato | cytosol | 26.09 | 10.2 |
| Bra034228.1-P | Field mustard | cytosol | 26.09 | 10.1 |
| PGSC0003DMT400015030 | Potato | cytosol | 25.22 | 9.8 |
| PGSC0003DMT400054358 | Potato | cytosol | 27.83 | 9.44 |
| Solyc08g006940.2.1 | Tomato | cytosol | 25.22 | 9.32 |
| PGSC0003DMT400090939 | Potato | cytosol | 24.35 | 9.24 |
| PGSC0003DMT400052833 | Potato | cytosol | 21.74 | 9.09 |
| AT4G05475.1 | Thale cress | cytosol | 24.35 | 9.06 |
| CDX86473 | Canola | cytosol | 20.0 | 8.98 |
| AT4G05470.1 | Thale cress | cytosol, plastid | 23.48 | 8.82 |
| CDY06267 | Canola | nucleus | 26.09 | 8.62 |
| CDY09910 | Canola | nucleus | 23.48 | 8.44 |
| Solyc08g013820.2.1 | Tomato | cytosol | 26.96 | 8.33 |
| Bra031582.1-P | Field mustard | nucleus | 25.22 | 8.29 |
| AT4G03630.1 | Thale cress | cytosol | 13.91 | 7.27 |
| CDY22112 | Canola | cytosol | 27.83 | 6.64 |
| Bra020205.1-P | Field mustard | plastid | 29.57 | 6.0 |
| CDY09154 | Canola | plastid | 29.57 | 6.0 |
| Bra034194.1-P | Field mustard | cytosol | 27.83 | 5.98 |
| AT5G52480.1 | Thale cress | cytosol | 10.43 | 4.98 |
| Bra000723.1-P | Field mustard | cytosol | 6.09 | 4.61 |
| Solyc08g006920.1.1 | Tomato | cytosol, mitochondrion, nucleus | 11.3 | 4.29 |
| PGSC0003DMT400058969 | Potato | cytosol | 2.61 | 3.37 |
| Os08t0191300-00 | Rice | cytosol, golgi | 5.22 | 2.33 |
| Bra000817.1-P | Field mustard | plastid | 3.48 | 2.22 |
| Os08t0194000-00 | Rice | cytosol, vacuole | 1.74 | 0.53 |
| Solyc08g013780.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| CDY21983 | Canola | cytosol | 0.0 | 0.0 |
| CDY21989 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os08t0193200-00 | EnsemblPlantsGene:Os08g0193200 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR44078 | PFAM:PF00646 | ProteinID:BAT04193.1 |
| SUPFAM:SSF81383 | UniParc:UPI00039393FA | UniProt:A0A0P0XCY3 | MapMan:35.2 | : | : |
Description
F-box protein 409Hypothetical conserved gene. (Os08t0193200-00)
Coordinates
chr8:-:5441457..5442964
Molecular Weight (calculated)
13013.8 Da
IEP (calculated)
6.239
GRAVY (calculated)
0.077
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDPGDPLP DTNRDWSKLP VDALSAVFMK LGTVEILMGA SFVCHSWLAA SKSPELWRFV DMTRHKVIFS KGTDILCAMA KAAIDRSDGR MESFWAQKFV
101: TCELLDYIVS RYLVH
101: TCELLDYIVS RYLVH
1: MDSSSSSPMK YEDKPRNWAE LLPELTASIL HRLGVVEILE NAQKVCRPWH RVCKDPSMWR KIDM
Arabidopsis Description
F-box/LRR protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8Z3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.