Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17656 | Canola | extracellular | 77.78 | 75.43 |
| CDY49755 | Canola | extracellular | 77.78 | 75.43 |
| CDY09428 | Canola | cytosol | 68.0 | 51.17 |
| CDY48808 | Canola | cytosol | 66.67 | 51.02 |
| CDY17657 | Canola | cytosol | 60.0 | 50.75 |
| AT2G01620.1 | Thale cress | cytosol | 62.67 | 48.29 |
| KRH60371 | Soybean | cytosol, plasma membrane, plastid | 38.67 | 27.53 |
| KRH41674 | Soybean | cytosol, plasma membrane, plastid | 33.33 | 26.41 |
| PGSC0003DMT400081916 | Potato | cytosol, plasma membrane | 33.33 | 24.67 |
| Solyc01g005450.2.1 | Tomato | extracellular | 32.89 | 24.1 |
| VIT_01s0011g05490.t01 | Wine grape | cytosol | 35.11 | 23.94 |
| TraesCS2B01G458800.1 | Wheat | cytosol, plasma membrane, plastid | 31.56 | 22.33 |
| Zm00001d050359_P001 | Maize | plastid | 31.56 | 22.19 |
| EES13867 | Sorghum | plastid | 32.0 | 22.15 |
| TraesCS2A01G438500.1 | Wheat | cytosol, plasma membrane, plastid | 30.67 | 21.7 |
| HORVU2Hr1G101900.5 | Barley | plasma membrane, plastid | 31.56 | 21.58 |
| TraesCS2D01G435600.1 | Wheat | cytosol | 29.78 | 20.18 |
| TraesCS2D01G435900.1 | Wheat | cytosol, mitochondrion, peroxisome | 29.78 | 20.18 |
| GSMUA_Achr5P05920_001 | Banana | cytosol, golgi | 25.33 | 18.51 |
| Os08t0428100-00 | Rice | mitochondrion | 21.33 | 16.61 |
| CDY40985 | Canola | cytosol | 26.67 | 15.27 |
| CDY04188 | Canola | cytosol | 26.22 | 15.13 |
| CDX99734 | Canola | cytosol | 26.22 | 14.82 |
| CDY39176 | Canola | cytosol | 24.89 | 14.21 |
| CDY20054 | Canola | cytosol | 23.56 | 13.87 |
| CDY00160 | Canola | cytosol | 22.22 | 13.51 |
| CDX83577 | Canola | cytosol | 24.89 | 13.05 |
| CDY13604 | Canola | cytosol | 24.89 | 12.99 |
Protein Annotations
| EnsemblPlants:CDY36244 | EnsemblPlantsGene:GSBRNA2T00060199001 | PANTHER:PTHR45375 | ProteinID:CDY36244 | ProteinID:CDY36244.1 | SEG:seg |
| UniParc:UPI0004EE1F47 | UniProt:A0A078HFQ2 | MapMan:35.1 | : | : | : |
Description
BnaC07g20980DBnaC07g20980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFQ2]
Coordinates
chrLK032371:+:137909..138763
Molecular Weight (calculated)
24949.2 Da
IEP (calculated)
6.600
GRAVY (calculated)
-0.213
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVVEPPLSS CLTDDNLWEF TLKSAGKLNT LIRRVVDANP LIKKLIVPGC TGLVPEGIIA CGESLGKNNH KLETLHINGV PGFTKDHLSA LLTYLPQEGA
101: IDLEVCPKCD QVRMIPPCSR ESCKREGRNE RECRGCWYCV PRCMECAVCL GPDTDQIEEA ACGADVVCLP CCQALPKCRF CNKPYCTGHS SLRQDNTTTD
201: ATMFVCQACH YRTRTSEKEP LNYQF
101: IDLEVCPKCD QVRMIPPCSR ESCKREGRNE RECRGCWYCV PRCMECAVCL GPDTDQIEEA ACGADVVCLP CCQALPKCRF CNKPYCTGHS SLRQDNTTTD
201: ATMFVCQACH YRTRTSEKEP LNYQF
001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
Arabidopsis Description
SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.