Factsheet for Os08t0428100-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0935300-02
Os05t0193900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	Os01t0935300-02	AT4G02570.1	12795696
AT2G01620.1	Os05t0193900-00	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13867	Sorghum	plastid	52.94	47.08
Zm00001d050359_P001	Maize	plastid	51.21	46.25
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	48.44	44.03
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	48.1	43.71
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	49.13	43.16
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	48.44	42.17
TraesCS2D01G435600.1	Wheat	cytosol	47.06	40.96
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	35.99	33.77
VIT_01s0011g05490.t01	Wine grape	cytosol	32.18	28.18
KRH60371	Soybean	cytosol, plasma membrane, plastid	29.76	27.22
CDY17657	Canola	cytosol	24.22	26.32
CDY48808	Canola	cytosol	25.61	25.17
Bra024868.1-P	Field mustard	cytosol	24.91	25.0
Bra026645.1-P	Field mustard	cytosol	25.61	24.75
Bra024867.1-P	Field mustard	extracellular	19.72	24.68
KRH41674	Soybean	cytosol, plasma membrane, plastid	24.22	24.65
CDY49755	Canola	extracellular	19.72	24.57
CDY17656	Canola	extracellular	19.72	24.57
Solyc01g005450.2.1	Tomato	extracellular	25.95	24.43
CDY09428	Canola	cytosol	25.26	24.41
AT2G01620.1	Thale cress	cytosol	24.22	23.97
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	24.57	23.36
CDY36244	Canola	cytosol	16.61	21.33
Os04t0485800-01	Rice	cytosol, extracellular	23.53	15.01

Protein Annotations

EnsemblPlants:Os08t0428100-00	EnsemblPlantsGene:Os08g0428100	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR45375	PFAM:PF12937	ProteinID:BAT05526.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000393B56E	UniProt:A0A0P0XFT5	MapMan:35.1	:

Description

F-box protein 445Hypothetical conserved gene. (Os08t0428100-00)

Coordinates

chr8:+:20591379..20596200

Molecular Weight (calculated)

31827.1 Da

IEP (calculated)

9.662

GRAVY (calculated)

-0.018

Length

289 amino acids

Sequence
(BLAST)

001: IPLADRRNRI FFFTRRALQA KPNLALVFPP SRRKHSSPLS LHMLPATATA SAAPPPPPPL PASPGGEPHA ALLLSLAYLP LRELLSCAGA CRRLRDAVAG
101: DPLLWRRVAV AAPPLARRLT DEALLALTGR AGGTLRSLRL LGCTRVSDAG LLRVVERNPG ITELYMPRCT GLTAEGVVKI VQVLYECKGN LNRIRLHGIC
201: RMTKHHLDAI SSAMCKGNQQ EDDQSLFYSH RVHEVLNTND ERRIDVDVCP MCTNVRLVFD CTRDGCRFVP SDLLNSYLLF ASKISLQIC

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.