Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026645.1-P | Field mustard | cytosol | 74.66 | 72.91 |
| CDY09428 | Canola | cytosol | 68.49 | 66.89 |
| CDY48808 | Canola | cytosol | 67.12 | 66.67 |
| CDY17656 | Canola | extracellular | 51.71 | 65.09 |
| CDY49755 | Canola | extracellular | 51.71 | 65.09 |
| Bra024867.1-P | Field mustard | extracellular | 51.37 | 64.94 |
| Bra024868.1-P | Field mustard | cytosol | 63.01 | 63.89 |
| CDY36244 | Canola | cytosol | 48.29 | 62.67 |
| CDY17657 | Canola | cytosol | 56.51 | 62.03 |
| KRH60371 | Soybean | cytosol, plasma membrane, plastid | 39.73 | 36.71 |
| KRH41674 | Soybean | cytosol, plasma membrane, plastid | 34.59 | 35.56 |
| PGSC0003DMT400081916 | Potato | cytosol, plasma membrane | 35.96 | 34.54 |
| VIT_01s0011g05490.t01 | Wine grape | cytosol | 38.7 | 34.24 |
| Solyc01g005450.2.1 | Tomato | extracellular | 35.62 | 33.88 |
| TraesCS2B01G458800.1 | Wheat | cytosol, plasma membrane, plastid | 32.53 | 29.87 |
| TraesCS2A01G438500.1 | Wheat | cytosol, plasma membrane, plastid | 32.19 | 29.56 |
| EES13867 | Sorghum | plastid | 32.53 | 29.23 |
| Zm00001d050359_P001 | Maize | plastid | 31.51 | 28.75 |
| TraesCS2D01G435900.1 | Wheat | cytosol, mitochondrion, peroxisome | 32.53 | 28.61 |
| HORVU2Hr1G101900.5 | Barley | plasma membrane, plastid | 31.85 | 28.27 |
| GSMUA_Achr5P05920_001 | Banana | cytosol, golgi | 28.08 | 26.62 |
| TraesCS2D01G435600.1 | Wheat | cytosol | 29.79 | 26.2 |
| Os08t0428100-00 | Rice | mitochondrion | 23.97 | 24.22 |
| AT3G27290.1 | Thale cress | cytosol | 25.68 | 19.63 |
| AT3G26000.1 | Thale cress | cytosol | 26.03 | 16.78 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:814691 | ProteinID:AAD12709.1 | ProteinID:AEC05474.1 | EMBL:AK117653 |
| ArrayExpress:AT2G01620 | EnsemblPlantsGene:AT2G01620 | RefSeq:AT2G01620 | TAIR:AT2G01620 | RefSeq:AT2G01620-TAIR-G | EnsemblPlants:AT2G01620.1 |
| TAIR:AT2G01620.1 | EMBL:AY084339 | Unigene:At.42475 | EMBL:BT005175 | GO:GO:0000003 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019538 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | Symbol:MEE11 | RefSeq:NP_565268.1 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR45375 | UniProt:Q9ZU90 | SUPFAM:SSF52047 | UniParc:UPI000000C56E | SEG:seg |
Description
SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
Coordinates
chr2:+:278124..279296
Molecular Weight (calculated)
33006.8 Da
IEP (calculated)
5.678
GRAVY (calculated)
-0.200
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.