Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00160 | Canola | cytosol | 51.83 | 53.51 |
| Bra039085.1-P | Field mustard | cytosol | 52.36 | 53.19 |
| CDY20054 | Canola | cytosol | 52.62 | 52.62 |
| VIT_14s0171g00480.t01 | Wine grape | cytosol | 34.82 | 27.71 |
| AT3G26000.1 | Thale cress | cytosol | 32.46 | 27.37 |
| KRG94336 | Soybean | cytosol | 34.82 | 27.14 |
| Solyc02g068000.2.1 | Tomato | cytosol | 24.87 | 26.84 |
| PGSC0003DMT400017823 | Potato | cytosol | 28.27 | 26.54 |
| KRH57627 | Soybean | cytosol | 33.51 | 25.86 |
| AT2G01620.1 | Thale cress | cytosol | 19.63 | 25.68 |
| Solyc02g093840.2.1 | Tomato | cytosol | 31.41 | 24.54 |
| PGSC0003DMT400052249 | Potato | cytosol | 31.41 | 24.44 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EntrezGene:822348 | ProteinID:AEE77289.1 | EMBL:AK221663 | ArrayExpress:AT3G27290 |
| EnsemblPlantsGene:AT3G27290 | RefSeq:AT3G27290 | TAIR:AT3G27290 | RefSeq:AT3G27290-TAIR-G | EnsemblPlants:AT3G27290.1 | TAIR:AT3G27290.1 |
| EMBL:AY060566 | Unigene:At.27371 | ProteinID:BAB02124.1 | EMBL:BT006347 | InterPro:F-box-like_dom_sf | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR032675 | InterPro:LRR_dom_sf | RefSeq:NP_566814.1 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0020090 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR44838 | PANTHER:PTHR44838:SF2 |
| UniProt:Q9LK24 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00000ABA07 | SEG:seg | : |
Description
F-box protein At3g27290 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK24]
Coordinates
chr3:-:10079462..10081533
Molecular Weight (calculated)
43127.1 Da
IEP (calculated)
4.567
GRAVY (calculated)
-0.286
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVNYERLRG SYNDYRKLEL GLGEFGDDFV GLPDDPFCMN IRSTLNSISD WFHENQIGLV SEDHTLPEDP FCMRVRSTLN TISDWFHENQ KEIGVVDQML
101: FETLSWFYNN DDDDGDDDDD GGGGGEAHDA FELVLPYLEL KEILAVEVVC RSLRDSVGKE PFFWTSIDLN DSFLQYRVTD ESLLKLTRRA LGGVRCLNLG
201: GCVGITDYGL KQVLASNPHL TKLSVSGCLR LSTAGLVSTL RDLKSSNRLG VKSLITGGAL YFTKEQFKEL NLLLGGDAKV GLQERKKRFY TSCRSEFYLE
301: DDRVTDLEIC PWCEKPSLVF DCPADTCPLK GQYPYSKSSC RACVVCIERC HECGSCLNDC ENKPFCFAFS CVVCIEKRSN RL
101: FETLSWFYNN DDDDGDDDDD GGGGGEAHDA FELVLPYLEL KEILAVEVVC RSLRDSVGKE PFFWTSIDLN DSFLQYRVTD ESLLKLTRRA LGGVRCLNLG
201: GCVGITDYGL KQVLASNPHL TKLSVSGCLR LSTAGLVSTL RDLKSSNRLG VKSLITGGAL YFTKEQFKEL NLLLGGDAKV GLQERKKRFY TSCRSEFYLE
301: DDRVTDLEIC PWCEKPSLVF DCPADTCPLK GQYPYSKSSC RACVVCIERC HECGSCLNDC ENKPFCFAFS CVVCIEKRSN RL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.