CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67751
CDX98303

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27290.1	CDX67751	AT3G58560.1	21798944
AT3G27290.1	CDX98303	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039085.1-P	Field mustard	cytosol	92.41	93.88
CDY00160	Canola	cytosol	71.2	73.51
AT3G27290.1	Thale cress	cytosol	52.62	52.62
CDY04188	Canola	cytosol	31.15	30.51
CDY39176	Canola	cytosol	31.15	30.2
VIT_14s0171g00480.t01	Wine grape	cytosol	36.91	29.38
CDY13604	Canola	cytosol	32.46	28.77
PGSC0003DMT400017823	Potato	cytosol	30.37	28.5
CDY40985	Canola	cytosol	29.32	28.5
CDX83577	Canola	cytosol	31.68	28.21
Solyc02g068000.2.1	Tomato	cytosol	25.92	27.97
CDY17656	Canola	extracellular	16.75	27.59
CDY49755	Canola	extracellular	16.75	27.59
KRH57627	Soybean	cytosol	35.34	27.27
KRG94336	Soybean	cytosol	34.82	27.14
CDX99734	Canola	cytosol	28.27	27.14
CDY17657	Canola	cytosol	18.85	27.07
PGSC0003DMT400052249	Potato	cytosol	32.2	25.05
Solyc02g093840.2.1	Tomato	cytosol	31.94	24.95
CDY48808	Canola	cytosol	18.85	24.49
CDY09428	Canola	cytosol	18.85	24.08
CDY36244	Canola	cytosol	13.87	23.56

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078G3U1	EnsemblPlants:CDY20054	ProteinID:CDY20054	ProteinID:CDY20054.1
InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00009895001	InterPro:IPR001611
InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516	PANTHER:PTHR44838
PANTHER:PTHR44838:SF2	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EE2801	SEG:seg

Description

BnaA09g01970DBnaA09g01970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G3U1]

Coordinates

chrLK032102:+:633384..634602

Molecular Weight (calculated)

42505.4 Da

IEP (calculated)

4.988

GRAVY (calculated)

-0.264

Length

382 amino acids

Sequence
(BLAST)

001: MEISFGELGA FGDVDRLRED DLFKTVSFSG YQTVYDTVSW AWDKDDSSNA LFNDLLSFGE EINSLPEDPF SMNIRSTLNS FSDWFHEMGE EAATLPNDPF
101: SMKDHKASVL DGGGGGGGGG GEEPHSAFDL VLPYLEMRDT FVVELVCRSL RDSVRKECCF WRTVDLSDSP LKYKVTDDSL LKLTRRAQGH LRCLNLGGCV
201: GITDDGLMQV LASNPLLTKL SVSGCHRLST VGLLSILRDL RSSNQLGLKS LITGGALYFT KEQFKELKLL LGADGEARSK SRRRRLYTSC RSDFSLDDDR
301: GTDIEICPWC EKPSLVFDCA SETCPLKDHP CPKQSCRACV VCIERCHDCG SCLNDCEHKP FCFAFSCVIC YKKRSNQLGE LL

Best Arabidopsis Sequence Match ( AT3G27290.1 )
(BLAST)

001: MEVNYERLRG SYNDYRKLEL GLGEFGDDFV GLPDDPFCMN IRSTLNSISD WFHENQIGLV SEDHTLPEDP FCMRVRSTLN TISDWFHENQ KEIGVVDQML
101: FETLSWFYNN DDDDGDDDDD GGGGGEAHDA FELVLPYLEL KEILAVEVVC RSLRDSVGKE PFFWTSIDLN DSFLQYRVTD ESLLKLTRRA LGGVRCLNLG
201: GCVGITDYGL KQVLASNPHL TKLSVSGCLR LSTAGLVSTL RDLKSSNRLG VKSLITGGAL YFTKEQFKEL NLLLGGDAKV GLQERKKRFY TSCRSEFYLE
301: DDRVTDLEIC PWCEKPSLVF DCPADTCPLK GQYPYSKSSC RACVVCIERC HECGSCLNDC ENKPFCFAFS CVVCIEKRSN RL

Arabidopsis Description

F-box protein At3g27290 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.