CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDX90932
CDX96963
CDY01389
CDY13521
CDY14922
CDY18013
CDY21896
CDY22060
CDY29370
CDY39073
CDY43408
CDY44209
CDY63159
CDY67544
CDY68971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	CDY01389	AT1G20140.1	12795696
AT2G01620.1	CDY29370	AT1G20140.1	12795696
AT2G01620.1	CDY43408	AT1G20140.1	12795696
AT2G01620.1	CDY44209	AT1G20140.1	12795696
AT2G01620.1	CDY63159	AT1G20140.1	12795696
AT2G01620.1	CDY67544	AT1G20140.1	12795696
AT2G01620.1	CDY68971	AT1G20140.1	12795696
AT2G01620.1	CDX68112	AT1G75950.1	12795696
AT2G01620.1	CDX73212	AT1G75950.1	12795696
AT2G01620.1	CDX80590	AT1G75950.1	12795696
AT2G01620.1	CDX85931	AT1G75950.1	12795696
AT2G01620.1	CDX87650	AT1G75950.1	12795696
AT2G01620.1	CDY13521	AT1G75950.1	12795696
AT2G01620.1	CDY39073	AT1G75950.1	12795696
AT2G01620.1	CDX68112	AT1G75950.1	21798944
AT2G01620.1	CDX73212	AT1G75950.1	21798944
AT2G01620.1	CDX80590	AT1G75950.1	21798944
AT2G01620.1	CDX85931	AT1G75950.1	21798944
AT2G01620.1	CDX87650	AT1G75950.1	21798944
AT2G01620.1	CDY13521	AT1G75950.1	21798944
AT2G01620.1	CDY39073	AT1G75950.1	21798944
AT2G01620.1	CDX96963	AT2G03170.1	12795696
AT2G01620.1	CDY14922	AT2G03170.1	12795696
AT2G01620.1	CDX90932	AT4G02570.1	12795696
AT2G01620.1	CDY18013	AT4G02570.1	12795696
AT2G01620.1	CDY21896	AT4G02570.1	12795696
AT2G01620.1	CDY22060	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09428	Canola	cytosol	89.8	88.29
Bra026645.1-P	Field mustard	cytosol	81.29	79.93
AT2G01620.1	Thale cress	cytosol	66.67	67.12
CDY36244	Canola	cytosol	51.02	66.67
CDY49755	Canola	extracellular	52.38	66.38
CDY17656	Canola	extracellular	52.38	66.38
CDY17657	Canola	cytosol	53.74	59.4
KRH60371	Soybean	cytosol, plasma membrane, plastid	37.76	35.13
KRH41674	Soybean	cytosol, plasma membrane, plastid	33.67	34.86
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	35.37	34.21
Solyc01g005450.2.1	Tomato	extracellular	35.37	33.88
VIT_01s0011g05490.t01	Wine grape	cytosol	37.76	33.64
Zm00001d050359_P001	Maize	plastid	33.33	30.62
EES13867	Sorghum	plastid	33.67	30.46
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	31.97	29.56
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	31.97	29.56
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	32.31	28.88
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	29.59	28.25
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	31.63	28.01
TraesCS2D01G435600.1	Wheat	cytosol	30.27	26.81
Os08t0428100-00	Rice	mitochondrion	25.17	25.61
CDY00160	Canola	cytosol	24.83	19.73
CDY20054	Canola	cytosol	24.49	18.85
CDY04188	Canola	cytosol	24.49	18.46
CDX99734	Canola	cytosol	24.49	18.09
CDY39176	Canola	cytosol	24.15	18.02
CDY40985	Canola	cytosol	23.81	17.81
CDY13604	Canola	cytosol	24.83	16.94
CDX83577	Canola	cytosol	24.49	16.78

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	UniProt:A0A078II59	EnsemblPlants:CDY48808	ProteinID:CDY48808	ProteinID:CDY48808.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00091736001
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PFAM:PF12937	PANTHER:PTHR45375	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0004EF2A5F	SEG:seg	:	:	:

Description

BnaC02g34060DBnaC02g34060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078II59]

Coordinates

chrLK032793:-:52812..53872

Molecular Weight (calculated)

33091.8 Da

IEP (calculated)

5.641

GRAVY (calculated)

-0.218

Length

294 amino acids

Sequence
(BLAST)

001: MRTEEKEEEE EEQWPSSRSA DEVLLIVLPY LHSLFELLSM TGVSRSLRDA IRDETALWTK IVVEPPLSSR LTDDILWEIT SKSSGKLNTL ILRQCLRITD
101: KGLRRVVDAN PLIRKIIVPG CTELTPEGII GCVESLANVE TLHINGVHRF TKDHLSALST CLPHEGAIDV EVCPKCNQVM MIPSCSRASC NRGRRQERKC
201: RGCWFCVSRC MECSLCLGSD TEIQEAACGG DSLCLECWLV LPKCRFCNKP YCTSHSSLRH DIATNDPSAQ PMFECEACHY RAGTNPYDAF DYQI

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.