Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0001g14860.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01620.1 | VIT_18s0001g14860.t01 | AT5G42190.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH60371 | Soybean | cytosol, plasma membrane, plastid | 46.97 | 49.05 |
| Solyc01g005450.2.1 | Tomato | extracellular | 44.24 | 47.56 |
| PGSC0003DMT400081916 | Potato | cytosol, plasma membrane | 43.33 | 47.04 |
| KRH41674 | Soybean | cytosol, plasma membrane, plastid | 39.7 | 46.13 |
| TraesCS2B01G458800.1 | Wheat | cytosol, plasma membrane, plastid | 37.88 | 39.31 |
| EES13867 | Sorghum | plastid | 38.48 | 39.08 |
| TraesCS2A01G438500.1 | Wheat | cytosol, plasma membrane, plastid | 37.58 | 38.99 |
| Bra024867.1-P | Field mustard | extracellular | 27.27 | 38.96 |
| CDY17656 | Canola | extracellular | 27.27 | 38.79 |
| CDY49755 | Canola | extracellular | 27.27 | 38.79 |
| AT2G01620.1 | Thale cress | cytosol | 34.24 | 38.7 |
| Zm00001d050359_P001 | Maize | plastid | 36.97 | 38.12 |
| CDY09428 | Canola | cytosol | 34.24 | 37.79 |
| Bra026645.1-P | Field mustard | cytosol | 34.24 | 37.79 |
| CDY48808 | Canola | cytosol | 33.64 | 37.76 |
| HORVU2Hr1G101900.5 | Barley | plasma membrane, plastid | 36.97 | 37.08 |
| TraesCS2D01G435900.1 | Wheat | cytosol, mitochondrion, peroxisome | 37.27 | 37.05 |
| TraesCS2D01G435600.1 | Wheat | cytosol | 36.67 | 36.45 |
| CDY17657 | Canola | cytosol | 28.48 | 35.34 |
| CDY36244 | Canola | cytosol | 23.94 | 35.11 |
| Bra024868.1-P | Field mustard | cytosol | 30.61 | 35.07 |
| GSMUA_Achr5P05920_001 | Banana | cytosol, golgi | 30.3 | 32.47 |
| Os08t0428100-00 | Rice | mitochondrion | 28.18 | 32.18 |
| VIT_01s0010g02380.t01 | Wine grape | cytosol | 31.21 | 21.46 |
| VIT_14s0171g00480.t01 | Wine grape | cytosol | 30.91 | 21.25 |
Protein Annotations
| Gene3D:1.20.1280.50 | EntrezGene:100268116 | wikigene:100268116 | Gene3D:3.80.10.10 | MapMan:35.1 | InterPro:4Fe4S_Fe_S_CS |
| ProteinID:CCB50798 | ProteinID:CCB50798.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | UniProt:F6HFE9 | EMBL:FN595752 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005856 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0030286 | InterPro:IPR001810 |
| InterPro:IPR032675 | EntrezGene:LOC100268116 | wikigene:LOC100268116 | InterPro:LRR_dom_sf | PFAM:PF00646 | ScanProsite:PS00198 |
| PFscan:PS50181 | PANTHER:PTHR45375 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI0002108475 | ArrayExpress:VIT_01s0011g05490 |
| EnsemblPlantsGene:VIT_01s0011g05490 | EnsemblPlants:VIT_01s0011g05490.t01 | unigene:Vvi.2367 | RefSeq:XP_002284829 | RefSeq:XP_002284829.1 | SEG:seg |
Description
No Description!
Coordinates
chr1:+:5136641..5138751
Molecular Weight (calculated)
37840.4 Da
IEP (calculated)
7.649
GRAVY (calculated)
-0.297
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNSHIVENK EHEAVNGSML RGAVLPSLGH SQKELTIQEV ERGPPHEALL LVLAYLPLFE LLNMSEVCRS LRDAVDKDVL QWLDIIVEKP LNMLFSDEIM
101: IKLTSKANGR LRTLALMSCT KITDDGLQQV IEKNPLINRL YLPACTGLTP EGIMRAVKTL TEHYQALKCV RINGVYNMKK EHLETLSSYL QMNPAKMEGQ
201: MQQLCFFHDH RNISVLRVEE SYRPIDLEIC PRCNEVRMVF DCPRETCKKK RERAMAECRG CYFCIPRCEE CGKCIEVEEP GEVVCADVLC SDCWLQLPKC
301: NFCNRPYCSR HANLQHSTSG YRMMKGHKKA
101: IKLTSKANGR LRTLALMSCT KITDDGLQQV IEKNPLINRL YLPACTGLTP EGIMRAVKTL TEHYQALKCV RINGVYNMKK EHLETLSSYL QMNPAKMEGQ
201: MQQLCFFHDH RNISVLRVEE SYRPIDLEIC PRCNEVRMVF DCPRETCKKK RERAMAECRG CYFCIPRCEE CGKCIEVEEP GEVVCADVLC SDCWLQLPKC
301: NFCNRPYCSR HANLQHSTSG YRMMKGHKKA
001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
Arabidopsis Description
SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.