Factsheet for Bra024868.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra015801.1-P
Bra025795.1-P
Bra036257.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	Bra012213.1-P	AT1G20140.1	12795696
AT2G01620.1	Bra012214.1-P	AT1G20140.1	12795696
AT2G01620.1	Bra012216.1-P	AT1G20140.1	12795696
AT2G01620.1	Bra025795.1-P	AT1G20140.1	12795696
AT2G01620.1	Bra003735.1-P	AT1G75950.1	12795696
AT2G01620.1	Bra008231.1-P	AT1G75950.1	12795696
AT2G01620.1	Bra015801.1-P	AT1G75950.1	12795696
AT2G01620.1	Bra003735.1-P	AT1G75950.1	21798944
AT2G01620.1	Bra008231.1-P	AT1G75950.1	21798944
AT2G01620.1	Bra015801.1-P	AT1G75950.1	21798944
AT2G01620.1	Bra039504.1-P	AT2G03170.1	12795696
AT2G01620.1	Bra000874.1-P	AT4G02570.1	12795696
AT2G01620.1	Bra036257.1-P	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17657	Canola	cytosol	80.9	87.59
Bra024867.1-P	Field mustard	extracellular	62.85	78.36
Bra026645.1-P	Field mustard	cytosol	68.06	65.55
AT2G01620.1	Thale cress	cytosol	63.89	63.01
KRH60371	Soybean	cytosol, plasma membrane, plastid	37.5	34.18
KRH41674	Soybean	cytosol, plasma membrane, plastid	33.33	33.8
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	34.03	32.24
Solyc01g005450.2.1	Tomato	extracellular	33.68	31.6
VIT_01s0011g05490.t01	Wine grape	cytosol	35.07	30.61
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	32.64	29.56
EES13867	Sorghum	plastid	32.99	29.23
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	31.94	28.93
Zm00001d050359_P001	Maize	plastid	31.6	28.44
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	32.29	28.27
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	31.6	27.41
TraesCS2D01G435600.1	Wheat	cytosol	30.9	26.81
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	28.47	26.62
Os08t0428100-00	Rice	mitochondrion	25.0	24.91
Bra017339.1-P	Field mustard	cytosol	29.86	22.05
Bra036353.1-P	Field mustard	cytosol	27.43	20.1
Bra025177.1-P	Field mustard	cytosol	28.47	19.03
Bra039085.1-P	Field mustard	cytosol	23.96	18.35

Protein Annotations

EnsemblPlants:Bra024868.1	EnsemblPlants:Bra024868.1-P	EnsemblPlantsGene:Bra024868	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR45375	SUPFAM:SSF52047	UniParc:UPI000253F998	UniProt:M4E7W2	MapMan:35.1	:

Description

AT2G01620 (E=1e-111) MEE11 | MEE11 (maternal effect embryo arrest 11)

Coordinates

chrA06:-:23983890..23984900

Molecular Weight (calculated)

32158.9 Da

IEP (calculated)

7.413

GRAVY (calculated)

-0.178

Length

288 amino acids

Sequence
(BLAST)

001: MRTEEKEQWR SESVHKMLMV LLPYLHSLFE LLSLSRVSPA LRNAIRDQTV LWTKVVVDPP LSSRLTDDIL WDFTSRSAGK LNTLILRKCS RVTSKGLWRV
101: VDANPLIKKL IVTGCTELVP EGIIACVESL AKNNHKLETL HINGVPGFTK DHLSALSTYL PQEGAIDLEV CPKCDQVRMI PPCSRESCKR VGRNERECRG
201: CWYCVPRCMQ CAVCLGPDTE VEETACGGDV LCLDCCQTLP KCRFCNKPYC TGHSSLRQDN TTTDAAMFAC QSSDYRTGAN ASDPIVLD

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.