Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d042193_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G01620.1 | Zm00001d042193_P001 | AT4G02570.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13867 | Sorghum | plastid | 86.25 | 84.92 |
| TraesCS2A01G438500.1 | Wheat | cytosol, plasma membrane, plastid | 64.06 | 64.47 |
| TraesCS2B01G458800.1 | Wheat | cytosol, plasma membrane, plastid | 62.81 | 63.21 |
| HORVU2Hr1G101900.5 | Barley | plasma membrane, plastid | 63.12 | 61.4 |
| TraesCS2D01G435900.1 | Wheat | cytosol, mitochondrion, peroxisome | 62.19 | 59.94 |
| TraesCS2D01G435600.1 | Wheat | cytosol | 60.0 | 57.83 |
| Os08t0428100-00 | Rice | mitochondrion | 46.25 | 51.21 |
| VIT_01s0011g05490.t01 | Wine grape | cytosol | 38.12 | 36.97 |
| Solyc01g005450.2.1 | Tomato | extracellular | 34.06 | 35.5 |
| KRH60371 | Soybean | cytosol, plasma membrane, plastid | 34.69 | 35.13 |
| PGSC0003DMT400081916 | Potato | cytosol, plasma membrane | 32.81 | 34.54 |
| CDY48808 | Canola | cytosol | 30.62 | 33.33 |
| GSMUA_Achr5P05920_001 | Banana | cytosol, golgi | 31.56 | 32.79 |
| KRH41674 | Soybean | cytosol, plasma membrane, plastid | 28.75 | 32.39 |
| CDY09428 | Canola | cytosol | 30.0 | 32.11 |
| Bra024867.1-P | Field mustard | extracellular | 23.12 | 32.03 |
| Bra024868.1-P | Field mustard | cytosol | 28.44 | 31.6 |
| CDY36244 | Canola | cytosol | 22.19 | 31.56 |
| AT2G01620.1 | Thale cress | cytosol | 28.75 | 31.51 |
| Bra026645.1-P | Field mustard | cytosol | 29.38 | 31.44 |
| CDY49755 | Canola | extracellular | 22.5 | 31.03 |
| CDY17656 | Canola | extracellular | 22.5 | 31.03 |
| CDY17657 | Canola | cytosol | 24.69 | 29.7 |
| Zm00001d003250_P001 | Maize | cytosol | 23.75 | 16.63 |
| Zm00001d025717_P001 | Maize | cytosol | 23.12 | 15.29 |
Protein Annotations
| EnsemblPlants:Zm00001d050359_P001 | EnsemblPlants:Zm00001d050359_T001 | EnsemblPlantsGene:Zm00001d050359 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:4Fe4S_Fe_S_CS | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 |
| InterPro:LRR_dom_sf | PANTHER:PTHR45375 | PFAM:PF12937 | ProteinID:AQK52411.1 | ScanProsite:PS00198 | SEG:seg |
| SUPFAM:SSF81383 | UniParc:UPI000182BA34 | UniProt:A0A1D6Q1C0 | MapMan:35.1 | : | : |
Description
F-box protein SKIP28
Coordinates
chr4:+:83491443..83500858
Molecular Weight (calculated)
35438.0 Da
IEP (calculated)
8.015
GRAVY (calculated)
-0.168
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPTTATAAA PPPPTAGPAS SPSEPHAALL LALTYMRLRE LLSCARTCRG LREAVAGDPL LWLRLVVEPP LSHRITDEAL LALTDRAQGR LRSLHLLGCP
101: RVSDAGLLRI VERNHDVTEL FVPRCTGLTA DGLVKIIHFL HGQHKGNLSR VRLHGICKVN NHHLDIIKSL MCRGSQQQDA QALHYNHRVH EVLNTDDGRP
201: IDVDLCPLCR NVRLVFDCTR KNCREVKDGR SRCRGCFFCV ARCETCGGCI DLEELGESGL ACSDFLCMDC WLKLPKCCTC NRPYCERHSN LKENLSASGQ
301: FTCQECAAFA TSLRSRGEGY
101: RVSDAGLLRI VERNHDVTEL FVPRCTGLTA DGLVKIIHFL HGQHKGNLSR VRLHGICKVN NHHLDIIKSL MCRGSQQQDA QALHYNHRVH EVLNTDDGRP
201: IDVDLCPLCR NVRLVFDCTR KNCREVKDGR SRCRGCFFCV ARCETCGGCI DLEELGESGL ACSDFLCMDC WLKLPKCCTC NRPYCERHSN LKENLSASGQ
301: FTCQECAAFA TSLRSRGEGY
001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI
Arabidopsis Description
SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.