Factsheet for Zm00001d003250_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001774_P001
Zm00001d002885_P001
Zm00001d007654_P001
Zm00001d007662_P001
Zm00001d007664_P001
Zm00001d007666_P001
Zm00001d007669_P001
Zm00001d007893_P001
Zm00001d026657_P001
Zm00001d029981_P001
Zm00001d031508_P001
Zm00001d042193_P001
Zm00001d048746_P001
Zm00001d048748_P001
Zm00001d048752_P001
Zm00001d048754_P001
Zm00001d048757_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	Zm00001d001774_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d002885_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d007654_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d007662_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d007664_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d007666_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d007669_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d007893_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d026657_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d029981_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d031508_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d048746_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d048748_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d048752_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d048754_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d048757_P001	AT3G44260.1	21798944
AT3G26000.1	Zm00001d042193_P001	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12408	Sorghum	cytosol	86.21	86.21
Zm00001d025717_P001	Maize	cytosol	75.27	71.07
Os04t0485800-01	Rice	cytosol, extracellular	51.64	52.1
TraesCS2B01G363000.1	Wheat	nucleus	46.61	40.65
TraesCS2D01G343000.1	Wheat	nucleus	46.83	37.02
TraesCS2A01G320200.1	Wheat	nucleus	46.61	36.98
Bra017339.1-P	Field mustard	cytosol	30.2	35.38
CDY39176	Canola	cytosol	30.2	35.03
CDY04188	Canola	cytosol	29.76	34.87
CDX99734	Canola	cytosol	29.76	34.17
Bra036353.1-P	Field mustard	cytosol	29.32	34.1
CDY40985	Canola	cytosol	29.1	33.84
CDY13604	Canola	cytosol	30.63	32.48
Bra025177.1-P	Field mustard	cytosol	30.42	32.25
CDX83577	Canola	cytosol	29.76	31.7
HORVU2Hr1G083980.2	Barley	nucleus	42.23	31.43
KRH42623	Soybean	cytosol	30.2	30.6
GSMUA_Achr3P02640_001	Banana	cytosol	26.91	30.52
AT3G26000.1	Thale cress	cytosol	30.2	30.46
VIT_01s0010g02380.t01	Wine grape	cytosol	31.73	30.21
GSMUA_Achr2P20980_001	Banana	cytosol	30.85	29.75
KRH58731	Soybean	cytosol	29.76	29.37
PGSC0003DMT400041014	Potato	cytosol, plastid	29.54	28.12
Solyc04g024940.2.1	Tomato	cytosol, plastid	29.54	28.12
PGSC0003DMT400041013	Potato	cytosol, plastid	19.91	27.91
Zm00001d050359_P001	Maize	plastid	16.63	23.75

Protein Annotations

Gene3D:3.80.10.10	MapMan:35.1	EMBL:BT067186	UniProt:C0PFW7	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
ProteinID:ONM16515.1	PFAM:PF12937	PANTHER:PTHR44838	PANTHER:PTHR44838:SF1	SUPFAM:SSF81383	UniParc:UPI000195CB68
EnsemblPlantsGene:Zm00001d003250	EnsemblPlants:Zm00001d003250_P001	EnsemblPlants:Zm00001d003250_T001	SEG:seg	:	:

Description

F-box protein SKIP14

Coordinates

chr2:+:37946068..37950408

Molecular Weight (calculated)

50222.8 Da

IEP (calculated)

4.336

GRAVY (calculated)

-0.012

Length

457 amino acids

Sequence
(BLAST)

001: MALNCSSRSL WVADDCASMM LGCGCWSEEA SPLSSRGVNS LWWDDLELEE EESDPVDLLP TDPFGMNLET TFTAAIASCI GDLTGMSGAG HLGSGDDDGF
101: YADLSYYLNQ AFVLTPEPWS GAYTSVFEDS FVSGCLSGAG GMEQFSRLPP SSFCSEPIGV TDDPSSSCDT ALPCCDMVDV APVQEGNDAH EAMVFVLSYL
201: GLRDILSIEM VCKSLRSAVR NEPFLWKCIH IDSHLGEKMS DADLLCLTQK SPGSLQCLSL MCCVNITDQG LKAVLESNLQ LTKLGIFGAF RITHQGLVDS
301: LRSFSMEADI GIKKLRVANR VTASEVQYVE LLSLMKIDKE MPLHKQEPRI FHADRLLPDL HGGYVPDSFV PDLHDEYALD IEKCPLCPNY KLVYDCTSKE
401: CKTSGSSICR GCVVCISRCL RCGRCIDSEF EFEETFFLGS ICHDCVKYSP HHRKIDV

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.