Factsheet for PGSC0003DMT400041013

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400042215
PGSC0003DMT400063662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	PGSC0003DMT400042215	AT3G44260.1	21798944
AT3G26000.1	PGSC0003DMT400063662	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g024940.2.1	Tomato	cytosol, plastid	89.57	60.83
PGSC0003DMT400041014	Potato	cytosol, plastid	71.47	48.54
VIT_01s0010g02380.t01	Wine grape	cytosol	49.08	33.33
KRH42623	Soybean	cytosol	43.25	31.26
KRH58731	Soybean	cytosol	42.94	30.24
CDY13604	Canola	cytosol	39.26	29.7
Bra025177.1-P	Field mustard	cytosol	38.65	29.23
Bra017339.1-P	Field mustard	cytosol	34.36	28.72
CDX83577	Canola	cytosol	37.73	28.67
CDY04188	Canola	cytosol	34.05	28.46
CDY39176	Canola	cytosol	34.36	28.43
CDX99734	Canola	cytosol	34.66	28.39
Bra036353.1-P	Field mustard	cytosol	33.74	27.99
CDY40985	Canola	cytosol	33.13	27.48
AT3G26000.1	Thale cress	cytosol	34.36	24.72
GSMUA_Achr3P02640_001	Banana	cytosol	26.69	21.59
GSMUA_Achr2P20980_001	Banana	cytosol	30.37	20.89
Os04t0485800-01	Rice	cytosol, extracellular	28.22	20.31
Zm00001d003250_P001	Maize	cytosol	27.91	19.91
PGSC0003DMT400017823	Potato	cytosol	24.85	19.9
EES12408	Sorghum	cytosol	26.99	19.26
PGSC0003DMT400052249	Potato	cytosol	27.91	18.53
Zm00001d025717_P001	Maize	cytosol	25.77	17.36
TraesCS2B01G363000.1	Wheat	nucleus	24.23	15.08
TraesCS2D01G343000.1	Wheat	nucleus	26.07	14.71
TraesCS2A01G320200.1	Wheat	nucleus	25.46	14.41
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	12.27	13.16
HORVU2Hr1G083980.2	Barley	nucleus	23.31	12.38

Protein Annotations

EnsemblPlants:PGSC0003DMT400041013	EnsemblPlantsGene:PGSC0003DMG402015867	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44838
PANTHER:PTHR44838:SF2	PFscan:PS50181	PGSC:PGSC0003DMG402015867	SUPFAM:SSF81383	UniParc:UPI000294950A	UniProt:M1BAS2
MapMan:35.1	:	:	:	:	:

Description

Non-S-locus F-box 2411 [Source:PGSC_GENE;Acc:PGSC0003DMG402015867]

Coordinates

chr4:-:43895882..43897918

Molecular Weight (calculated)

36223.6 Da

IEP (calculated)

4.457

GRAVY (calculated)

-0.222

Length

326 amino acids

Sequence
(BLAST)

001: MALNFSHRPI FPAHISEDNL VSPMRIVNGC LVEGVPENNV ENFPWSWRVC REPHDGFEYG YGGKRRDKCD YSELVSEDII DLLPADPFGM DISTTITAIT
101: GWLEDLEVDY GGCRRNHAGP SNEDYGLFAG FDFIWNDSMR FQSFPINHVR SDDKLNRGDP VNWLIGERDM RDALAHVGLG SACNVGDTAG FNNVGSVSFL
201: PQTMETGSGA MSCSGEDEGA PHEALSFALG YLGVKDLLMV ESVCRSLRLT VKNDPLLWKS IHIENSLTEI SDDILLQLTS RAQGNLQCLS LLECTRITDD
301: GLRRVLDSNP HLTKVSCSSS FFFLSW

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.