Factsheet for Solyc04g024940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007840.2.1
Solyc01g099290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	Solyc01g007840.2.1	AT3G44260.1	21798944
AT3G26000.1	Solyc01g099290.2.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041013	Potato	cytosol, plastid	60.83	89.57
PGSC0003DMT400041014	Potato	cytosol, plastid	76.67	76.67
KRH42623	Soybean	cytosol	48.12	51.22
VIT_01s0010g02380.t01	Wine grape	cytosol	51.04	51.04
KRH58731	Soybean	cytosol	47.92	49.68
CDY04188	Canola	cytosol	38.96	47.95
Bra017339.1-P	Field mustard	cytosol	38.54	47.44
CDY39176	Canola	cytosol	38.75	47.21
CDY13604	Canola	cytosol	41.46	46.17
Bra025177.1-P	Field mustard	cytosol	41.04	45.71
CDX99734	Canola	cytosol	37.71	45.48
CDX83577	Canola	cytosol	40.62	45.45
Bra036353.1-P	Field mustard	cytosol	37.08	45.29
CDY40985	Canola	cytosol	36.67	44.78
AT3G26000.1	Thale cress	cytosol	37.92	40.18
GSMUA_Achr3P02640_001	Banana	cytosol	31.67	37.72
GSMUA_Achr2P20980_001	Banana	cytosol	35.0	35.44
Solyc02g068000.2.1	Tomato	cytosol	25.0	33.9
Solyc02g093840.2.1	Tomato	cytosol	32.71	32.11
Os04t0485800-01	Rice	cytosol, extracellular	29.58	31.35
Solyc01g005450.2.1	Tomato	extracellular	19.58	30.62
Zm00001d003250_P001	Maize	cytosol	28.12	29.54
EES12408	Sorghum	cytosol	27.92	29.32
Zm00001d025717_P001	Maize	cytosol	27.08	26.86
TraesCS2B01G363000.1	Wheat	nucleus	27.5	25.19
TraesCS2D01G343000.1	Wheat	nucleus	28.54	23.7
TraesCS2A01G320200.1	Wheat	nucleus	28.33	23.61
HORVU2Hr1G083980.2	Barley	nucleus	27.08	21.17

Protein Annotations

EnsemblPlants:Solyc04g024940.2.1	EnsemblPlantsGene:Solyc04g024940.2	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR44838
PANTHER:PTHR44838:SF2	PFscan:PS50181	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002765819	UniProt:K4BQU1
MapMan:35.1	:	:	:	:	:

Description

F-box protein SKIP14 [Source:Projected from Arabidopsis thaliana (AT3G26000) UniProtKB/Swiss-Prot;Acc:Q9LU91]

Coordinates

chr4:-:27391460..27394553

Molecular Weight (calculated)

53532.9 Da

IEP (calculated)

4.861

GRAVY (calculated)

-0.189

Length

480 amino acids

Sequence
(BLAST)

001: MALNFSHRPI FPAHISEDNL VSPMRIVNGC LVEGVPENNV ENFAWSWRVC REPRDGFEYG YGRETVDKCD YSESVSEDII DLLPADPFGM DISTTITAIT
101: GWLEYLEVDY GGCRRNHASP SNEDCGLIAG FDFVWNDSMR FQSFPINHVQ SDDKLNRGEP VSLLIGERDM RDALAHVGLG SACNVGDTAG LNNVGSVSFF
201: PLTMGTGSGA TSCSGKDEGA PHEALSFALG YLGVKDLLTV ESVCRSLRLT VKTDPLLWKS IHIENPLTEI SDDILLQLTS RAQGNLQCLS LLECTRITDD
301: GLRRVLDSNP HLTKLFVPAC TRLSIEGIVN MLKSFNCQRG KMGIKNLWIG GLYGVMREHF EELEFLLGSD SQTRQNVYKP HFFSRRNIYR LADDSRAIDV
401: QLCPMCKKVR LVYDCPAEGC QVKDEAIKEC RACSLCILRC SECGRCINNT EYVETFCLEL LCSDCSKQPL ECKNEQKCSL

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.