Factsheet for GSMUA_Achr3P02640_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P19450_001
GSMUA_Achr6P19460_001
GSMUA_Achr8P18010_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P29700_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26000.1	GSMUA_Achr6P19450_001	AT3G44260.1	21798944
AT3G26000.1	GSMUA_Achr6P19460_001	AT3G44260.1	21798944
AT3G26000.1	GSMUA_Achr8P18010_001	AT3G44260.1	21798944
AT3G26000.1	GSMUA_Achr9P29700_001	AT3G44260.1	21798944
AT3G26000.1	GSMUA_AchrUn_...	AT3G44260.1	21798944
AT3G26000.1	GSMUA_Achr9P17620_001	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20980_001	Banana	cytosol	54.34	46.2
Bra017339.1-P	Field mustard	cytosol	34.99	36.15
CDY04188	Canola	cytosol	34.99	36.15
CDY39176	Canola	cytosol	34.99	35.79
VIT_01s0010g02380.t01	Wine grape	cytosol	40.69	34.17
CDX99734	Canola	cytosol	33.5	33.92
Bra036353.1-P	Field mustard	cytosol	33.0	33.84
CDY40985	Canola	cytosol	33.0	33.84
KRH58731	Soybean	cytosol	38.21	33.26
KRH42623	Soybean	cytosol	37.22	33.26
CDY13604	Canola	cytosol	34.74	32.48
Bra025177.1-P	Field mustard	cytosol	34.49	32.25
PGSC0003DMT400041014	Potato	cytosol, plastid	37.97	31.88
CDX83577	Canola	cytosol	33.75	31.7
Solyc04g024940.2.1	Tomato	cytosol, plastid	37.72	31.67
Os04t0485800-01	Rice	cytosol, extracellular	35.48	31.57
AT3G26000.1	Thale cress	cytosol	33.0	29.36
EES12408	Sorghum	cytosol	31.02	27.35
Zm00001d003250_P001	Maize	cytosol	30.52	26.91
PGSC0003DMT400041013	Potato	cytosol, plastid	21.59	26.69
TraesCS2B01G363000.1	Wheat	nucleus	34.49	26.53
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	19.35	25.32
Zm00001d025717_P001	Maize	cytosol	29.78	24.79
TraesCS2D01G343000.1	Wheat	nucleus	34.24	23.88
TraesCS2A01G320200.1	Wheat	nucleus	33.25	23.26
HORVU2Hr1G083980.2	Barley	nucleus	33.25	21.82

Protein Annotations

EnsemblPlants:GSMUA_Achr3P02640_001	EnsemblPlants:GSMUA_Achr3T02640_001	EnsemblPlantsGene:GSMUA_Achr3G02640_001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	ncoils:Coil	PANTHER:PTHR44838
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002950DF5	UniProt:M0SB82	MapMan:35.1	:

Description

Putative OsFBX146 - F-box domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G02640_001]

Coordinates

chr3:-:1736951..1741392

Molecular Weight (calculated)

45236.0 Da

IEP (calculated)

5.138

GRAVY (calculated)

-0.213

Length

403 amino acids

Sequence
(BLAST)

001: MALNFPSCSI FSTRCIHTDG ESSRLRCERS PLVSRWETDS GLADVEVAYD PLDLLPEDPF GMGLGDLFGW TLLYSSETQF CHHGWMEGCD GWVNESSTEF
101: SVHEAQSGNL ESSSDAGQSS NCNHSEAFSS GDVGMPHDGL FFCLAYMDVQ SLLSMGGVCR SLRLAVQRDN LLWRCIHINS PLSEKITDDI LLRLTLQARE
201: YLQCLSMSSC SKITDDGLKL VLDNCPRLKK LSVPGCVRLS IDGIINNLKA FQSRGMPGIE HLKLGGFFII SPQQYGELKM LLGVDQCQQG QTRNPRFYHI
301: HRLSPACYDD CILDIEMCPV CHRYKLVYDC PSESCQEKGP NHCRACDVCI GRCVQCGKCV KDCTYVETFF LEYLCSDCWK PPPVHRDTEV KWPLVLHDTD
401: EAK

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.