Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH42623 | Soybean | cytosol | 90.28 | 92.68 |
| VIT_01s0010g02380.t01 | Wine grape | cytosol | 60.26 | 58.12 |
| Bra017339.1-P | Field mustard | cytosol | 46.44 | 55.13 |
| CDY04188 | Canola | cytosol | 46.22 | 54.87 |
| CDY39176 | Canola | cytosol | 46.22 | 54.31 |
| CDX99734 | Canola | cytosol | 45.57 | 53.02 |
| PGSC0003DMT400041014 | Potato | cytosol, plastid | 53.78 | 51.88 |
| Bra036353.1-P | Field mustard | cytosol | 43.41 | 51.15 |
| CDY40985 | Canola | cytosol | 43.2 | 50.89 |
| Bra025177.1-P | Field mustard | cytosol | 46.87 | 50.35 |
| CDX83577 | Canola | cytosol | 46.44 | 50.12 |
| CDY13604 | Canola | cytosol | 46.22 | 49.65 |
| Solyc04g024940.2.1 | Tomato | cytosol, plastid | 49.68 | 47.92 |
| AT3G26000.1 | Thale cress | cytosol | 44.71 | 45.7 |
| PGSC0003DMT400041013 | Potato | cytosol, plastid | 30.24 | 42.94 |
| KRG94336 | Soybean | cytosol | 41.25 | 38.98 |
| GSMUA_Achr3P02640_001 | Banana | cytosol | 33.26 | 38.21 |
| KRH57627 | Soybean | cytosol | 40.39 | 37.78 |
| GSMUA_Achr2P20980_001 | Banana | cytosol | 37.15 | 36.29 |
| Os04t0485800-01 | Rice | cytosol, extracellular | 31.53 | 32.23 |
| KRH60371 | Soybean | cytosol, plasma membrane, plastid | 21.81 | 31.96 |
| KRH41674 | Soybean | cytosol, plasma membrane, plastid | 19.01 | 30.99 |
| EES12408 | Sorghum | cytosol | 29.81 | 30.2 |
| Zm00001d003250_P001 | Maize | cytosol | 29.37 | 29.76 |
| Zm00001d025717_P001 | Maize | cytosol | 29.16 | 27.89 |
| TraesCS2B01G363000.1 | Wheat | nucleus | 29.81 | 26.34 |
| TraesCS2D01G343000.1 | Wheat | nucleus | 29.81 | 23.88 |
| TraesCS2A01G320200.1 | Wheat | nucleus | 29.59 | 23.78 |
| HORVU2Hr1G083980.2 | Barley | nucleus | 27.65 | 20.85 |
Protein Annotations
| EMBL:ACUP02003284 | EnsemblPlants:KRH58731 | EnsemblPlantsGene:GLYMA_05G144800 | EntrezGene:100778863 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | PANTHER:PTHR44838 | PANTHER:PTHR44838:SF2 | ProteinID:KRH58731 | ProteinID:KRH58731.1 |
| SEG:seg | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI00023C4AA4 | UniProt:I1K3J1 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr5:+:33861274..33865092
Molecular Weight (calculated)
50544.9 Da
IEP (calculated)
5.095
GRAVY (calculated)
-0.210
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MALNFSHRPI FSEDNLVSPM RMGIPEKSVV DNCFDYGRER GGGGANHDDI LDLLPSDPFG MDISTTVTAI TGWLEDLEIV DYGGYRRDEL GASDGNYQLF
101: AGLNFIWNNA MRFHASCVEE KRGFGESCSV RNDGAAAASS NFGFGSVNNY DEVSGLPAIS RSGDVVRRVG GAGRGDVARP DGGGSGGEEL APHPALSFSL
201: GYLGLSDLLV VERVCKSLHS TVCGDPLLWR SIHVDPPLNE RITDDVLFQL TNRAQGHLQC LSLVECTRIT DDGLKRVLQS NPKLTKLSVP GCTRLSIEGI
301: VGILKAYNSM GTQGLKHLHI GGLYGVTQKH FEELSFLLGA DGPLLQHSHK PHYYCRGNLY LSCDDDRVID IEVCPLCQNL RLVYDCPAES CQGVEHTTQI
401: CRACTLCIPR CSQCGCCIND SEYEETFCLE LLCSSCSKQL VKCSEREDRK IGSDKSAVIH EQS
101: AGLNFIWNNA MRFHASCVEE KRGFGESCSV RNDGAAAASS NFGFGSVNNY DEVSGLPAIS RSGDVVRRVG GAGRGDVARP DGGGSGGEEL APHPALSFSL
201: GYLGLSDLLV VERVCKSLHS TVCGDPLLWR SIHVDPPLNE RITDDVLFQL TNRAQGHLQC LSLVECTRIT DDGLKRVLQS NPKLTKLSVP GCTRLSIEGI
301: VGILKAYNSM GTQGLKHLHI GGLYGVTQKH FEELSFLLGA DGPLLQHSHK PHYYCRGNLY LSCDDDRVID IEVCPLCQNL RLVYDCPAES CQGVEHTTQI
401: CRACTLCIPR CSQCGCCIND SEYEETFCLE LLCSSCSKQL VKCSEREDRK IGSDKSAVIH EQS
001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
Arabidopsis Description
SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.