CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96349
KRH38033
KRH68083
KRH71803
KRH71804

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27290.1	KRG96349	AT3G58560.1	21798944
AT3G27290.1	KRH38033	AT3G58560.1	21798944
AT3G27290.1	KRH68083	AT3G58560.1	21798944
AT3G27290.1	KRH71803	AT3G58560.1	21798944
AT3G27290.1	KRH71804	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57627	Soybean	cytosol	81.84	81.01
VIT_14s0171g00480.t01	Wine grape	cytosol	44.49	45.42
KRH42623	Soybean	cytosol	38.98	42.35
KRH58731	Soybean	cytosol	38.98	41.25
PGSC0003DMT400017823	Potato	cytosol	30.41	36.61
Solyc02g068000.2.1	Tomato	cytosol	25.71	35.59
Bra039085.1-P	Field mustard	cytosol	27.14	35.37
AT3G27290.1	Thale cress	cytosol	27.14	34.82
CDY20054	Canola	cytosol	27.14	34.82
PGSC0003DMT400052249	Potato	cytosol	34.29	34.22
CDY00160	Canola	cytosol	25.51	33.78
Solyc02g093840.2.1	Tomato	cytosol	32.65	32.72
KRH60371	Soybean	cytosol, plasma membrane, plastid	20.41	31.65
KRH41674	Soybean	cytosol, plasma membrane, plastid	17.76	30.63

Protein Annotations

EntrezGene:100781716	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02011935	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EnsemblPlantsGene:GLYMA_19G077200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675
UniProt:K7MX54	EnsemblPlants:KRG94336	ProteinID:KRG94336	ProteinID:KRG94336.1	InterPro:LRR_dom_sf	PFAM:PF12937
PANTHER:PTHR44838	PANTHER:PTHR44838:SF1	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0002960AC6	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:27762114..27765713

Molecular Weight (calculated)

55138.4 Da

IEP (calculated)

4.392

GRAVY (calculated)

-0.238

Length

490 amino acids

Sequence
(BLAST)

001: MDSVGESSFL VPQEKGSCPS IGSVLDGYLI NCCSLCGFNE KLEGETCFEM INALLGDLDD TEEVVIEDDV LDRLPMDPFG MNITAFSDWI EDFEWGFRPL
101: DVEFEVDETH EKIGDHDHLH FLGLSWDFNG PENLQPQTVD AKGNDMLVSG DVFNGYQNFD VVFDEGIVAD GSTRGFLSVS QRHGDYRVQS KEAEESRNYT
201: KIECDAEGGF PHDALFFVLG YLGVRDLLSV EGVCKSLCDA VRGDPLLWRT MHIDQPLNER ITDDSLVKLT NRAQGTLQHL ALVNCLWITD SGLGRVLQSN
301: PRLMKLSVPD CIRLTIEGIL FNLRALKSSG KLGIKHLRIG GLAGVCHVTD QQFEELKELL DASKYLQQQD QKPQFYGEYS HITCEDDRAI DIEVCPRCEK
401: LRPVYDCPAE SCQPKHQASQ LCRGCTICIA RCLHCGRCIK DFDYEETFCL DLLCLNCWNQ FLHCPEKGGK EATKCTIISQ TTMYQFCLYG

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.