Factsheet for PGSC0003DMT400052249

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029795

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27290.1	PGSC0003DMT400029795	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g093840.2.1	Tomato	cytosol	77.8	78.12
PGSC0003DMT400017823	Potato	cytosol	35.03	42.26
VIT_14s0171g00480.t01	Wine grape	cytosol	41.14	42.08
KRG94336	Soybean	cytosol	34.22	34.29
PGSC0003DMT400041014	Potato	cytosol, plastid	33.4	34.17
KRH57627	Soybean	cytosol	32.79	32.53
CDY20054	Canola	cytosol	25.05	32.2
Bra039085.1-P	Field mustard	cytosol	24.44	31.91
AT3G27290.1	Thale cress	cytosol	24.44	31.41
CDY00160	Canola	cytosol	23.63	31.35
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	17.31	27.96
PGSC0003DMT400041013	Potato	cytosol, plastid	18.53	27.91

Protein Annotations

EntrezGene:102596264	Gene3D:3.80.10.10	MapMan:35.1	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR017896
InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M1BT29	PFAM:PF12937	EnsemblPlantsGene:PGSC0003DMG400020268	PGSC:PGSC0003DMG400020268
EnsemblPlants:PGSC0003DMT400052249	ScanProsite:PS00198	PFscan:PS50181	PFscan:PS51379	PANTHER:PTHR44838	PANTHER:PTHR44838:SF1
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000294E0F6	RefSeq:XP_006338669.1	:	:

Description

F-box protein SKIP14 [Source:PGSC_GENE;Acc:PGSC0003DMG400020268]

Coordinates

chr2:+:47738416..47742850

Molecular Weight (calculated)

55761.0 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.406

Length

491 amino acids

Sequence
(BLAST)

001: MDMSLNREEG FLAGTKLDNN YFDKEYPNEK LDRFGDFWGL NREIDKFHDH KSGKTEMVSD DISDFWELNC EKGNFQDHKD ENTKMGSDDI VDLLPQDPFD
101: MDISTKITGW LEGINKDFGL KDLGFCTDEI EVDVQLYAEF NIVVKGAIRV HQDVGENSYV SEIDIGEGLP MDVEIEDVMN SCYWVFRDAA QEDQSGMNDL
201: CDADGGAPSD ALYLSLNYLG LRDLLSVEGV CKALRDVVRS DPLLWRNIHV DYPLSNKITD DVLIKLTDRA QGHLHSLSLV HCPRITDSSL NCVLERNSSL
301: KKLSVPGCVR LTADGILRNL KVLMSAGKPR LKYLGVNGLF GMTHQHFEEF KVLLGVDSSK LPSTRKPRFL QGGQLSVSSD DDYAIDIEIC PKCQQLRVVY
401: DCPSESCQKK KSTAQSCRAC TICIKRCINC GRCLNNCEYE ELFSFDNLCL DCCRDCYREF LDHQERQERI TVPLENPVPH KQTSCHFFFC G

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.