Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400029795 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G27290.1 | PGSC0003DMT400029795 | AT3G58560.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g068000.2.1 | Tomato | cytosol | 77.64 | 89.27 |
| PGSC0003DMT400052249 | Potato | cytosol | 42.26 | 35.03 |
| VIT_14s0171g00480.t01 | Wine grape | cytosol | 39.07 | 33.12 |
| CDY00160 | Canola | cytosol | 28.01 | 30.81 |
| KRG94336 | Soybean | cytosol | 36.61 | 30.41 |
| CDY20054 | Canola | cytosol | 28.5 | 30.37 |
| Bra039085.1-P | Field mustard | cytosol | 28.01 | 30.32 |
| PGSC0003DMT400041014 | Potato | cytosol, plastid | 35.38 | 30.0 |
| KRH57627 | Soybean | cytosol | 36.12 | 29.7 |
| AT3G27290.1 | Thale cress | cytosol | 26.54 | 28.27 |
| PGSC0003DMT400081916 | Potato | cytosol, plasma membrane | 19.66 | 26.32 |
| PGSC0003DMT400041013 | Potato | cytosol, plastid | 19.9 | 24.85 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400017823 | EnsemblPlantsGene:PGSC0003DMG400006922 | EntrezGene:102598755 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| PANTHER:PTHR44838 | PANTHER:PTHR44838:SF1 | PGSC:PGSC0003DMG400006922 | RefSeq:XP_006357180.1 | RefSeq:XP_015168784.1 | SEG:seg |
| SUPFAM:SSF52047 | UniParc:UPI000296D2C2 | UniProt:M1A9I8 | MapMan:35.1 | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006922]
Coordinates
chr2:+:26673559..26678272
Molecular Weight (calculated)
44907.5 Da
IEP (calculated)
5.294
GRAVY (calculated)
-0.316
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGNRGEGSS SGIKFDEGGG FSFDWEEEEL DENADLLPSD PFNMECRNQR TGFSTMTSWL EDFGFKIDEN EVAKLDSFLI RKMGIDQGAG FQLIDGNCVP
101: FGMIFREGLN GGHGLMDGDT TDNDQGRIND HCGVDGGNPP QALLLSLGYL GLGDLFVVER VSKPLRDAVV GDPLLWKNIN ITHPFCTNIT NDILINLTNR
201: AQGHLHSLSL FHCSKLTDAG LKHVLDRNPN LSKLNVQGCA RLTADGMLSN LKVWKTAGKT RLKYLGIYGL SGLTDKHMDE FKLLTGVDNS KLPTTRKPRF
301: FGGGRSRVTF DDDRAIDVEV CPICQRFELV YDCTSESCQK KQSSSQLCRG CVKCIKRCFD CGCCLINCDY VELFHFESLC LDCPINPLGS QKGEQKTAPL
401: SETTVGH
101: FGMIFREGLN GGHGLMDGDT TDNDQGRIND HCGVDGGNPP QALLLSLGYL GLGDLFVVER VSKPLRDAVV GDPLLWKNIN ITHPFCTNIT NDILINLTNR
201: AQGHLHSLSL FHCSKLTDAG LKHVLDRNPN LSKLNVQGCA RLTADGMLSN LKVWKTAGKT RLKYLGIYGL SGLTDKHMDE FKLLTGVDNS KLPTTRKPRF
301: FGGGRSRVTF DDDRAIDVEV CPICQRFELV YDCTSESCQK KQSSSQLCRG CVKCIKRCFD CGCCLINCDY VELFHFESLC LDCPINPLGS QKGEQKTAPL
401: SETTVGH
001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL
Arabidopsis Description
SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.