Factsheet for Bra039085.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003342.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27290.1	Bra003342.1-P	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20054	Canola	cytosol	93.88	92.41
CDY00160	Canola	cytosol	72.87	74.05
AT3G27290.1	Thale cress	cytosol	53.19	52.36
Bra017339.1-P	Field mustard	cytosol	31.65	30.51
Bra025177.1-P	Field mustard	cytosol	34.31	29.93
Bra036353.1-P	Field mustard	cytosol	29.79	28.5
VIT_14s0171g00480.t01	Wine grape	cytosol	35.9	28.12
PGSC0003DMT400017823	Potato	cytosol	30.32	28.01
Solyc02g068000.2.1	Tomato	cytosol	25.8	27.4
KRG94336	Soybean	cytosol	35.37	27.14
KRH57627	Soybean	cytosol	35.64	27.07
Bra024867.1-P	Field mustard	extracellular	16.22	26.41
PGSC0003DMT400052249	Potato	cytosol	31.91	24.44
Bra026645.1-P	Field mustard	cytosol	19.15	24.08
Bra024868.1-P	Field mustard	cytosol	18.35	23.96
Solyc02g093840.2.1	Tomato	cytosol	30.85	23.72

Protein Annotations

EnsemblPlants:Bra039085.1	EnsemblPlants:Bra039085.1-P	EnsemblPlantsGene:Bra039085	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR44838	PANTHER:PTHR44838:SF2	PFAM:PF13516	SMART:SM00367	SUPFAM:SSF52047	UniParc:UPI0002541B8E
UniProt:M4FDB4	MapMan:35.1	:	:	:	:

Description

AT3G27290 (E=4e-116) | F-box family protein-related

Coordinates

chrA09:-:1211798..1213015

Molecular Weight (calculated)

42043.7 Da

IEP (calculated)

4.848

GRAVY (calculated)

-0.305

Length

376 amino acids

Sequence
(BLAST)

001: MEISCGELGA FGDVDRLRED DLFKTVSFSG YQTVYDTVSW AWDGDDSSNA LFNDLLSFGE EINSLPEDPF YMNIRSTLNS FSDWFHEMGE EAATLPNDPF
101: SMKDHKASVL DGGGGEEPHS AFDLVIPYLE MRDTFAVESV CRSLRDSVRK ESCFWRTVDL SDSPLKYKVT DDSLLKLTRR AQGHLRCLNL GGCVSITDDG
201: LMQVLASNPR LTKLSVSGCH RLSTVGLLSI LRDLKSSNQL GVKSLVTGGA LYFTKEQFKE LKLLLGADGE EGSKSRRRRL YTSCRSDFSL DDERGTDIEI
301: CPWCEKPSLV FDCASETCPL KDHPCPKQSC RACVVCIERC HDCGSCLNDC EHKPFCFAFS CVICYKKRSN QLGELL

Best Arabidopsis Sequence Match ( AT3G27290.1 )
(BLAST)

001: MEVNYERLRG SYNDYRKLEL GLGEFGDDFV GLPDDPFCMN IRSTLNSISD WFHENQIGLV SEDHTLPEDP FCMRVRSTLN TISDWFHENQ KEIGVVDQML
101: FETLSWFYNN DDDDGDDDDD GGGGGEAHDA FELVLPYLEL KEILAVEVVC RSLRDSVGKE PFFWTSIDLN DSFLQYRVTD ESLLKLTRRA LGGVRCLNLG
201: GCVGITDYGL KQVLASNPHL TKLSVSGCLR LSTAGLVSTL RDLKSSNRLG VKSLITGGAL YFTKEQFKEL NLLLGGDAKV GLQERKKRFY TSCRSEFYLE
301: DDRVTDLEIC PWCEKPSLVF DCPADTCPLK GQYPYSKSSC RACVVCIERC HECGSCLNDC ENKPFCFAFS CVVCIEKRSN RL

Arabidopsis Description

F-box protein At3g27290 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.