Factsheet for Bra024867.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra003735.1-P
Bra008231.1-P
Bra012213.1-P
Bra012214.1-P
Bra012216.1-P
Bra015801.1-P
Bra025795.1-P
Bra036257.1-P
Bra039504.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	Bra012213.1-P	AT1G20140.1	12795696
AT2G01620.1	Bra012214.1-P	AT1G20140.1	12795696
AT2G01620.1	Bra012216.1-P	AT1G20140.1	12795696
AT2G01620.1	Bra025795.1-P	AT1G20140.1	12795696
AT2G01620.1	Bra003735.1-P	AT1G75950.1	12795696
AT2G01620.1	Bra008231.1-P	AT1G75950.1	12795696
AT2G01620.1	Bra015801.1-P	AT1G75950.1	12795696
AT2G01620.1	Bra003735.1-P	AT1G75950.1	21798944
AT2G01620.1	Bra008231.1-P	AT1G75950.1	21798944
AT2G01620.1	Bra015801.1-P	AT1G75950.1	21798944
AT2G01620.1	Bra039504.1-P	AT2G03170.1	12795696
AT2G01620.1	Bra000874.1-P	AT4G02570.1	12795696
AT2G01620.1	Bra036257.1-P	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17656	Canola	extracellular	98.27	97.84
CDY49755	Canola	extracellular	98.27	97.84
Bra024868.1-P	Field mustard	cytosol	78.36	62.85
Bra026645.1-P	Field mustard	cytosol	66.67	51.51
AT2G01620.1	Thale cress	cytosol	64.94	51.37
KRH60371	Soybean	cytosol, plasma membrane, plastid	39.83	29.11
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	37.23	28.29
KRH41674	Soybean	cytosol, plasma membrane, plastid	34.63	28.17
VIT_01s0011g05490.t01	Wine grape	cytosol	38.96	27.27
Solyc01g005450.2.1	Tomato	extracellular	35.93	27.04
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	32.9	23.9
EES13867	Sorghum	plastid	32.9	23.38
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	32.03	23.27
Zm00001d050359_P001	Maize	plastid	32.03	23.12
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	32.9	23.1
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	29.44	22.08
TraesCS2D01G435600.1	Wheat	cytosol	31.6	21.99
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	31.17	21.69
Os08t0428100-00	Rice	mitochondrion	24.68	19.72
Bra017339.1-P	Field mustard	cytosol	29.44	17.44
Bra036353.1-P	Field mustard	cytosol	29.0	17.05
Bra039085.1-P	Field mustard	cytosol	26.41	16.22
Bra025177.1-P	Field mustard	cytosol	28.14	15.08

Protein Annotations

EnsemblPlants:Bra024867.1	EnsemblPlants:Bra024867.1-P	EnsemblPlantsGene:Bra024867	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR45375	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000253F997	UniProt:M4E7W1	MapMan:35.1

Description

AT2G01620 (E=4e-058) MEE11 | MEE11 (maternal effect embryo arrest 11)

Coordinates

chrA06:-:23981523..23982392

Molecular Weight (calculated)

25827.7 Da

IEP (calculated)

7.095

GRAVY (calculated)

-0.016

Length

231 amino acids

Sequence
(BLAST)

001: MLMIVLPYLH SLFEFISLSG VSPVLRNSSR DQTVLWTKVV VELPLSSCIT DDNLWFTLKS SGKLNLIRRV VDANPLIKKL IVTGCTELVP EGIIACVETL
101: MKNNHKLETL HINGVPGFTK DHLSSLSTYL PQEGAIDLEV CPKCDQVRMI PPCSRESCKR EGRNERECRG CWYCVPRCME CAVCLGPDTD QIEEVACGGD
201: VVCLPCCQAL PKCRFCNKPY CTCRSQQPEA R

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.