Factsheet for TraesCS2D01G435900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	TraesCS3A01G457400.1	AT4G02570.1	12795696
AT2G01620.1	TraesCS3B01G497300.1	AT4G02570.1	12795696
AT2G01620.1	TraesCS3D01G450200.1	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	91.27	95.28
TraesCS2D01G435600.1	Wheat	cytosol	90.36	90.36
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	88.55	89.36
Zm00001d050359_P001	Maize	plastid	59.94	62.19
EES13867	Sorghum	plastid	59.34	60.62
Os08t0428100-00	Rice	mitochondrion	42.17	48.44
KRH41674	Soybean	cytosol, plasma membrane, plastid	31.93	37.32
VIT_01s0011g05490.t01	Wine grape	cytosol	37.05	37.27
KRH60371	Soybean	cytosol, plasma membrane, plastid	35.24	37.03
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	31.93	34.87
Solyc01g005450.2.1	Tomato	extracellular	32.23	34.85
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	31.93	34.42
AT2G01620.1	Thale cress	cytosol	28.61	32.53
Bra026645.1-P	Field mustard	cytosol	28.92	32.11
CDY48808	Canola	cytosol	28.01	31.63
Bra024868.1-P	Field mustard	cytosol	27.41	31.6
Bra024867.1-P	Field mustard	extracellular	21.69	31.17
CDY09428	Canola	cytosol	27.71	30.77
CDY49755	Canola	extracellular	21.39	30.6
CDY17656	Canola	extracellular	21.39	30.6
CDY17657	Canola	cytosol	24.1	30.08
CDY36244	Canola	cytosol	20.18	29.78
TraesCS2D01G343000.1	Wheat	nucleus	24.7	14.19

Protein Annotations

EnsemblPlants:TraesCS2D01G435900.1	EnsemblPlantsGene:TraesCS2D01G435900	Gene3D:3.80.10.10	InterPro:4Fe4S_Fe_S_CS	InterPro:IPR032675	InterPro:LRR_dom_sf
PANTHER:PTHR45375	ScanProsite:PS00198	SEG:seg	SUPFAM:SSF52047	MapMan:35.1	:

Description

No Description!

Coordinates

chr2D:-:546808577..546815290

Molecular Weight (calculated)

37084.9 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.206

Length

332 amino acids

Sequence
(BLAST)

001: MSRHPVSEVT THHTMLPTTA TASTPPPPPA EPPGEPHAAL FLALGYMRLP ELLACWRVCR LLGEAVAGDP LLWRRLAVEP PLSGRVTDQV LLKLTARAEG
101: TLRSLRLFGC LHVSDAGLLR VVEHNPRVTE IYVPGCKGLT GDGVVNIVQL LHEHKGNISR LRLDGISRMS KHHLDIIMSL MCKGNPQGQQ DGIPLFYNHR
201: AREALNTNDE RPIDVDVCSV CANIRLVFDC TRDDCRKVRD SLWRCRGCYF CFPRCEKCGG CISPEDLVEA DLACSDLMCL DCWLTVPKCS TCNRPYCERH
301: ENLMVSLSMA GQFSCQRCKE LDASQEDQED DY

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.