CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96405
KRH68142

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G01620.1	KRG96405	AT4G02570.1	12795696
AT2G01620.1	KRH68142	AT4G02570.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41674	Soybean	cytosol, plasma membrane, plastid	79.43	88.38
VIT_01s0011g05490.t01	Wine grape	cytosol	49.05	46.97
PGSC0003DMT400081916	Potato	cytosol, plasma membrane	43.99	45.72
Solyc01g005450.2.1	Tomato	extracellular	43.04	44.3
Bra024867.1-P	Field mustard	extracellular	29.11	39.83
AT2G01620.1	Thale cress	cytosol	36.71	39.73
CDY17656	Canola	extracellular	29.11	39.66
CDY49755	Canola	extracellular	29.11	39.66
CDY36244	Canola	cytosol	27.53	38.67
TraesCS2B01G458800.1	Wheat	cytosol, plasma membrane, plastid	38.29	38.05
CDY09428	Canola	cytosol	35.76	37.79
Bra026645.1-P	Field mustard	cytosol	35.76	37.79
CDY48808	Canola	cytosol	35.13	37.76
CDY17657	Canola	cytosol	31.65	37.59
Bra024868.1-P	Field mustard	cytosol	34.18	37.5
TraesCS2A01G438500.1	Wheat	cytosol, plasma membrane, plastid	37.34	37.11
HORVU2Hr1G101900.5	Barley	plasma membrane, plastid	38.61	37.08
TraesCS2D01G435600.1	Wheat	cytosol	37.34	35.54
EES13867	Sorghum	plastid	36.39	35.38
TraesCS2D01G435900.1	Wheat	cytosol, mitochondrion, peroxisome	37.03	35.24
Zm00001d050359_P001	Maize	plastid	35.13	34.69
GSMUA_Achr5P05920_001	Banana	cytosol, golgi	29.43	30.19
Os08t0428100-00	Rice	mitochondrion	27.22	29.76
KRH58731	Soybean	cytosol	31.96	21.81
KRH42623	Soybean	cytosol	30.06	21.06
KRG94336	Soybean	cytosol	31.65	20.41
KRH57627	Soybean	cytosol	31.65	20.2

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100806504	Gene3D:3.80.10.10	MapMan:35.1	InterPro:4Fe4S_Fe_S_CS	EMBL:ACUP02003364
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_05G235800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
UniProt:I1K5P3	InterPro:IPR001810	InterPro:IPR032675	EnsemblPlants:KRH60371	ProteinID:KRH60371	ProteinID:KRH60371.1
InterPro:LRR_dom_sf	PFAM:PF00646	ScanProsite:PS00198	PFscan:PS50181	PANTHER:PTHR45375	SMART:SM00256
SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00023C546D	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:41243188..41245090

Molecular Weight (calculated)

36156.6 Da

IEP (calculated)

5.831

GRAVY (calculated)

-0.228

Length

316 amino acids

Sequence
(BLAST)

001: MEESSKAVEV EQEASEAKAP HEALFLVLSY LPVYEVVVMS QVCTSLRDAV NNDILPWLNV IVQRPLSWRL NDEILIKITS KANGRLKTLA LINCMHVTDH
101: GLQRVVQQNP LINKLHIPAC TGITPEGVLG AVKTLCQRSN CLKTLSINGI YNIQKEHLDM LIMNLGKNQP LEEQQKQQQP VYYHERCSFS VFKQEESWRL
201: IDLEICPRCF EVRMVYDCPK EHCTRREWPL APCRGCNFCI PRCENCGGCI ESGEVEEGAC EDIFCLECWL QLPKCSFCNK PYCKQHTNWW CTSSDSSLIC
301: KVCDENSHGY TYTDVL

Best Arabidopsis Sequence Match ( AT2G01620.1 )
(BLAST)

001: MKTELEEEEE EEWRSVHEVL LIVLPYLHSL FELLSMIRVS RSLRDAIRDE TALWTKLVIE PPLSSRLTDD ILSEFSSKSA GKLKTLILRQ CLMVTNKGLR
101: RVVDANPLIT KIIVPGCSGL TPEGIMECVE SLSKNNHKLE TLHINGVNGF TKQHLSALYT YLSSEGTIDL EVCPKCDEVR MIPSCSRESC NQKQRKCRGC
201: WLCIPRCAEC AVCLVGSDTE SQEAACGNDD VLCLECWLVL PKCRFCNKPY CTNHSSRRHE IAITDAASRP SFECEACYYR AGTNPYEVDY QI

Arabidopsis Description

SKIP28F-box protein SKIP28 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.