CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96349
KRH38033
KRH68083
KRH71803
KRH71804

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27290.1	KRG96349	AT3G58560.1	21798944
AT3G27290.1	KRH38033	AT3G58560.1	21798944
AT3G27290.1	KRH68083	AT3G58560.1	21798944
AT3G27290.1	KRH71803	AT3G58560.1	21798944
AT3G27290.1	KRH71804	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94336	Soybean	cytosol	81.01	81.84
VIT_14s0171g00480.t01	Wine grape	cytosol	43.84	45.21
KRH42623	Soybean	cytosol	37.37	41.02
KRH58731	Soybean	cytosol	37.78	40.39
PGSC0003DMT400017823	Potato	cytosol	29.7	36.12
Bra039085.1-P	Field mustard	cytosol	27.07	35.64
Solyc02g068000.2.1	Tomato	cytosol	25.45	35.59
CDY20054	Canola	cytosol	27.27	35.34
CDY00160	Canola	cytosol	26.06	34.86
AT3G27290.1	Thale cress	cytosol	25.86	33.51
PGSC0003DMT400052249	Potato	cytosol	32.53	32.79
Solyc02g093840.2.1	Tomato	cytosol	31.31	31.7
KRH60371	Soybean	cytosol, plasma membrane, plastid	20.2	31.65
KRH41674	Soybean	cytosol, plasma membrane, plastid	17.58	30.63

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100781553	Gene3D:3.80.10.10	MapMan:35.1	EMBL:ACUP02002870	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_05G073500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
InterPro:IPR032675	UniProt:K7KND2	EnsemblPlants:KRH57627	ProteinID:KRH57627	ProteinID:KRH57627.1	ProteinID:KRH57628.1
InterPro:LRR_dom_sf	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR44838	PANTHER:PTHR44838:SF1	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI0002958303	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:8297000..8300549

Molecular Weight (calculated)

55669.2 Da

IEP (calculated)

4.641

GRAVY (calculated)

-0.234

Length

495 amino acids

Sequence
(BLAST)

001: MDSCGKSSFL VPQEKGSCPS IGSVFDGYLI KNCSRLGNSF SLCGFNENLD EETCFEMINA LLGDLDDSEE VVIDDDVLDR LPMDPFGMNI TAFSDWIGDF
101: EWGFRPEDVE FGVDETHEKI GDHDHLHFLG LSWAWNGPEN LQPHKVNAKG NDMSVSGDVL NGYQNFDVVF DEGIVVDGST RGFLSVSHGD YRVQSREVEE
201: LRNCTEIECD AEGGVPHDAL FFVLGYLGVR DLLSVEGVCR SLCDAVRGDP LLWRTMHIDQ PLNERITDDT LVKLTNRAQG TLQHLALVNC LWITDSGLRR
301: VLQSNPRLTK LSVPDCIRLT IEGILFHLRA LKSSGKLGIK HLRIGGLAGV CHVTDQQFDE LKELLDASKY LQQGDQKPQF FGEYSHIICE DDRAIDIEVC
401: PRCKKLRPVY DCPAESCQQK HQASQLCRGC TICIARCIHC GRCIKDFDYE ETFCLDLLCL NCWNQFLHCP EKGGKEATKC TIISQRTMYQ FCLYG

Best Arabidopsis Sequence Match ( AT3G26000.1 )
(BLAST)

001: MALNFSHRPF SSHLSEEPMM IANGNWCSSF DNGRKNTGGD ASSVDILDVL PSDPFGMDIN NTFTAITGWL EDLEDDYNNQ YGRRRRDDIW IGDGNRQQLF
101: AGLSFFWNNA MQFQSSGYSY GSESLFGGAF DGSLFSTCKF PESSGENNGF GGALDGDGSC HGAFISASSV DEVLSHENAR NGEVVGSSDR CNNGEEDAYV
201: HPAIGFCLYH LRGKDLLSVS MVCKSLHTTV CDDTLLWKHI HICRPLNEKI TEEALLHLTE RAQGTMQCLR IVDCCRITDD CLKRVVARNR QVVKIGVPGC
301: TRITIDGILS VLRDLKSAGK LQVKHLQLRG LFGVTKDHYD ELIDLLNIDN KVKQTIQKPR FYHRGEACVS CDDDRALDIE MCPKCQNFKL VYDCPAEDCK
401: GKKKGSEECR ACSLCIQRCY HCGRCIIDTE YEEMFCLELL CAVCSKPTPK LTL

Arabidopsis Description

SKIP14F-box protein SKIP14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU91]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.