CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03220
KRH04337
KRH28286
KRH57136
KRH58200
KRH77206

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	KRH04337	AT4G17950.1	21798944
AT3G58560.1	KRH28286	AT4G17950.1	21798944
AT3G58560.1	KRH58200	AT4G17950.1	21798944
AT3G58560.1	KRH77206	AT4G17950.1	21798944
AT3G58560.1	KRH03220	AT4G24690.1	21798944
AT3G58560.1	KRH57136	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38033	Soybean	cytosol	98.37	30.17
KRG96349	Soybean	cytosol	94.57	29.0
KRH68083	Soybean	cytosol	94.02	28.74
CDX88992	Canola	mitochondrion	83.15	27.62
VIT_08s0007g07020.t01	Wine grape	cytosol	86.96	26.53
Bra003344.1-P	Field mustard	cytosol	82.61	26.53
PGSC0003DMT400029795	Potato	cytosol	85.87	26.12
Bra003342.1-P	Field mustard	cytosol	83.7	26.01
CDX67751	Canola	cytosol	83.7	26.01
CDX98303	Canola	cytosol	83.7	26.01
AT3G58580.1	Thale cress	cytosol	84.78	25.87
GSMUA_Achr9P25420_001	Banana	cytosol	81.52	25.73
CDY00572	Canola	cytosol	83.7	25.67
Os10t0412100-01	Rice	cytosol	84.24	25.62
GSMUA_Achr4P17200_001	Banana	cytosol	80.98	25.51
Bra014566.1-P	Field mustard	cytosol	83.15	25.5
HORVU1Hr1G035390.1	Barley	cytosol	83.7	25.45
TraesCS1D01G134400.1	Wheat	cytosol	83.7	25.45
TraesCS1A01G137900.1	Wheat	cytosol	83.7	25.45
CDX67753	Canola	cytosol	82.61	25.33
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	79.35	25.3
Bra007403.1-P	Field mustard	cytosol	81.52	25.13
Zm00001d032979_P003	Maize	cytosol	82.61	25.12
TraesCS1B01G153300.2	Wheat	cytosol	82.61	25.12
AT3G58560.1	Thale cress	cytosol	82.07	25.08
OQU91798	Sorghum	cytosol	82.61	25.08
CDY49233	Canola	cytosol	81.52	25.0
CDX71943	Canola	cytosol	81.52	24.92
Os03t0166800-01	Rice	cytosol	82.07	24.88
Zm00001d014187_P011	Maize	cytosol	81.52	24.88
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	78.26	24.24
CDX98305	Canola	plastid	82.61	23.86
KXG40109	Sorghum	mitochondrion	79.35	23.55
Zm00001d027811_P001	Maize	mitochondrion	80.43	22.98
KRH48475	Soybean	cytosol	32.07	20.56
Solyc10g078950.1.1	Tomato	cytosol	62.5	20.5
KRH76418	Soybean	nucleus	29.89	18.97
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	59.78	15.07
KRH39729	Soybean	plastid	30.43	14.32
KRH39200	Soybean	nucleus, plastid	32.61	14.02
KRH41616	Soybean	cytosol	25.0	12.53
KRH60320	Soybean	plastid	26.63	11.26
KRH16019	Soybean	plastid	27.72	5.99
KRH05096	Soybean	cytosol	11.96	4.31
KRH71804	Soybean	cytosol	1.09	0.52

Protein Annotations

EMBL:ACUP02001071	EnsemblPlants:KRH71803	EnsemblPlantsGene:GLYMA_02G1697002	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	ProteinID:KRH71803	ProteinID:KRH71803.1
SEG:seg	SUPFAM:SSF56219	UniParc:UPI0006EE0339	UniProt:A0A0R0L4H8	MapMan:16.8.2.1.2.1	:

Description

hypothetical protein

Coordinates

chr2:-:26244194..26245135

Molecular Weight (calculated)

20398.4 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.176

Length

184 amino acids

Sequence
(BLAST)

001: ANTHVNVPQD LKDVKLWQVH TLLKGLEKIA ASADIPMLVC GDFNSVPGSA PHALLAMGKV DPSHPDLAVD PLNILRPHSK LVHQLPLVSA YSSFARTVGL
101: GYEQHKRRMD GGTNEPLFTN VTRDFIGTLD YIFYTADSLV VESLLELLDE ESLRKDTALP SPEWSSDHIA LLAEFRCCKN KSRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.