Factsheet for HORVU1Hr1G035390.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G049980.12
HORVU2Hr1G082590.15
HORVU2Hr1G105800.13
HORVU6Hr1G053250.1
HORVU7Hr1G065300.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	HORVU1Hr1G049980.12	AT4G17950.1	21798944
AT3G58560.1	HORVU2Hr1G105800.13	AT4G17950.1	21798944
AT3G58560.1	HORVU7Hr1G065300.2	AT4G17950.1	21798944
AT3G58560.1	HORVU2Hr1G082590.15	AT4G24690.1	21798944
AT3G58560.1	HORVU6Hr1G053250.1	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G134400.1	Wheat	cytosol	99.5	99.5
TraesCS1A01G137900.1	Wheat	cytosol	99.34	99.34
TraesCS1B01G153300.2	Wheat	cytosol	99.01	99.01
Os10t0412100-01	Rice	cytosol	91.9	91.9
OQU91798	Sorghum	cytosol	90.08	89.93
Zm00001d032979_P003	Maize	cytosol	89.75	89.75
Zm00001d014187_P011	Maize	cytosol	87.6	87.89
KRH71803	Soybean	cytosol	25.45	83.7
VIT_08s0007g07020.t01	Wine grape	cytosol	76.69	76.95
GSMUA_Achr9P25420_001	Banana	cytosol	73.88	76.67
PGSC0003DMT400029795	Potato	cytosol	75.21	75.21
KRH38033	Soybean	cytosol	74.05	74.67
KRG96349	Soybean	cytosol	73.88	74.5
GSMUA_Achr4P17200_001	Banana	cytosol	71.57	74.14
KRH68083	Soybean	cytosol	73.55	73.92
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	70.08	73.48
Solyc10g078950.1.1	Tomato	cytosol	67.93	73.26
AT3G58560.1	Thale cress	cytosol	72.4	72.76
CDX67753	Canola	cytosol	72.07	72.67
CDY00572	Canola	cytosol	71.9	72.5
Bra014566.1-P	Field mustard	cytosol	71.74	72.33
Bra003344.1-P	Field mustard	cytosol	68.43	72.25
CDX88992	Canola	mitochondrion	65.95	72.02
AT3G58580.1	Thale cress	cytosol	71.74	71.97
CDX67751	Canola	cytosol	70.41	71.96
Bra003342.1-P	Field mustard	cytosol	70.25	71.79
CDX98303	Canola	cytosol	70.08	71.62
Bra007403.1-P	Field mustard	cytosol	70.25	71.19
CDX71943	Canola	cytosol	70.74	71.1
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	69.59	70.88
CDY49233	Canola	cytosol	70.08	70.67
KRH71804	Soybean	cytosol	44.3	69.97
CDX98305	Canola	plastid	71.57	67.97
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	65.95	54.66
HORVU0Hr1G020140.2	Barley	mitochondrion, nucleus	17.19	22.61
HORVU7Hr1G042150.3	Barley	nucleus, plastid	17.69	21.84

Protein Annotations

EMBL:AK374808	EnsemblPlants:HORVU1Hr1G035390.1	EnsemblPlantsGene:HORVU1Hr1G035390	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801
SEG:seg	SUPFAM:SSF56219	UniParc:UPI0002008E4F	UniProt:F2EF82	MapMan:16.8.2.1.2.1	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EF82]

Coordinates

chrchr1H:-:232912381..232922273

Molecular Weight (calculated)

67043.7 Da

IEP (calculated)

6.655

GRAVY (calculated)

-0.244

Length

605 amino acids

Sequence
(BLAST)

001: MLSVVRVHLP SEIPIVGCEI TPYVLLRLPN GAISTDDVPE TAAVDGHFMR YRWYRIQSDR KVAICSVHPM EQATIQCLGC LKSKIPAAKS YHCSAKCFSD
101: AWQHHKVLHE RASSALNENG AEEEELFGRF GSGSSGILSS GSGSMSNLGQ SPGVNNGPVP LYPSGSDKTS GETWFEVGRS QTYTPTADDI GHVLRFECAA
201: VDTEKKVPAG PPTSIMTSRV IPAPTPTPRH LIQVNGDVLG HLDMDSQSSS FGTFTVLSYN ILADAYATSD AYSYCPTWAL SWTYRRQNLM REIIGYHADI
301: ICLQEVQLNH FEDFFAPEFD KHGYQALYKK RTTEVYAGVP HAIDGCATFF RRDRFSHVKK YEVEFNKAAQ SLTDAIIPPA QKRVALNRLI KDNIALIAVL
401: EAKFGNQGTE NPGKRQLLCV ANTHVNVHQD LKDVKLWEVQ TLLKGLEKIA NSADIPMLVC GDFNSIPGST PHGLLAIGKV DQLHPDLAID PLGILRPVSK
501: LTHQLPLVSA YSSFARMVGV GYDLEHQRRR MDSGTNEPLF TNCTRDFTGT VDYIFYTADS LSVESLLELL DEESLRKDTA LPSPEWSSDH IALLAEFRCK
601: PRIRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.