Factsheet for TraesCS1B01G153300.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G190900.1
TraesCS1B01G206100.2
TraesCS1D01G194900.2
TraesCS2A01G327000.1
TraesCS2A01G449500.1
TraesCS2B01G355000.6
TraesCS2B01G470900.1
TraesCS2D01G335900.1
TraesCS2D01G448900.1
TraesCS6A01G208300.2
TraesCS6B01G236800.1
TraesCS6D01G191900.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	TraesCS1A01G190900.1	AT4G17950.1	21798944
AT3G58560.1	TraesCS1B01G206100.2	AT4G17950.1	21798944
AT3G58560.1	TraesCS1D01G194900.2	AT4G17950.1	21798944
AT3G58560.1	TraesCS2A01G449500.1	AT4G17950.1	21798944
AT3G58560.1	TraesCS2B01G470900.1	AT4G17950.1	21798944
AT3G58560.1	TraesCS2D01G448900.1	AT4G17950.1	21798944
AT3G58560.1	TraesCS2A01G327000.1	AT4G24690.1	21798944
AT3G58560.1	TraesCS2B01G355000.6	AT4G24690.1	21798944
AT3G58560.1	TraesCS2D01G335900.1	AT4G24690.1	21798944
AT3G58560.1	TraesCS6A01G208300.2	AT4G24690.1	21798944
AT3G58560.1	TraesCS6B01G236800.1	AT4G24690.1	21798944
AT3G58560.1	TraesCS6D01G191900.3	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G134400.1	Wheat	cytosol	99.5	99.5
TraesCS1A01G137900.1	Wheat	cytosol	99.34	99.34
HORVU1Hr1G035390.1	Barley	cytosol	99.01	99.01
Os10t0412100-01	Rice	cytosol	91.9	91.9
OQU91798	Sorghum	cytosol	90.41	90.26
Zm00001d032979_P003	Maize	cytosol	89.92	89.92
Zm00001d014187_P011	Maize	cytosol	87.6	87.89
KRH71803	Soybean	cytosol	25.12	82.61
VIT_08s0007g07020.t01	Wine grape	cytosol	76.69	76.95
GSMUA_Achr9P25420_001	Banana	cytosol	73.88	76.67
PGSC0003DMT400029795	Potato	cytosol	75.37	75.37
KRH38033	Soybean	cytosol	73.88	74.5
KRG96349	Soybean	cytosol	73.88	74.5
GSMUA_Achr4P17200_001	Banana	cytosol	71.57	74.14
KRH68083	Soybean	cytosol	73.72	74.09
Solyc10g078950.1.1	Tomato	cytosol	68.26	73.62
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	69.75	73.14
CDX67753	Canola	cytosol	72.07	72.67
AT3G58560.1	Thale cress	cytosol	72.23	72.59
CDY00572	Canola	cytosol	71.9	72.5
Bra014566.1-P	Field mustard	cytosol	71.74	72.33
Bra003344.1-P	Field mustard	cytosol	68.43	72.25
CDX88992	Canola	mitochondrion	66.12	72.2
AT3G58580.1	Thale cress	cytosol	71.57	71.81
CDX67751	Canola	cytosol	70.25	71.79
Bra003342.1-P	Field mustard	cytosol	70.08	71.62
Bra007403.1-P	Field mustard	cytosol	70.58	71.52
CDX98303	Canola	cytosol	69.92	71.45
CDX71943	Canola	cytosol	71.07	71.43
CDY49233	Canola	cytosol	70.41	71.0
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	69.59	70.88
KRH71804	Soybean	cytosol	44.46	70.23
CDX98305	Canola	plastid	71.57	67.97
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	65.95	54.66
TraesCS7B01G114200.1	Wheat	plastid	17.52	23.77
TraesCS1B01G254600.1	Wheat	mitochondrion	15.37	23.48
TraesCS3B01G248600.1	Wheat	mitochondrion	19.67	12.99

Protein Annotations

EnsemblPlants:TraesCS1B01G153300.2	EnsemblPlantsGene:TraesCS1B01G153300	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691
InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801	SEG:seg
SUPFAM:SSF56219	TIGR:cd09097	MapMan:16.8.2.1.2.1	:	:	:

Description

No Description!

Coordinates

chr1B:+:249622327..249632650

Molecular Weight (calculated)

67089.8 Da

IEP (calculated)

6.702

GRAVY (calculated)

-0.250

Length

605 amino acids

Sequence
(BLAST)

001: MLSVVRVHLP SEIPIVGCEI TPYVLLRLPN GAISTEDVPE TAAVDGHFMR YRWYRIQSDR KVAICSVHPM EQATIQCLGC LKSKIPAAKS YHCSAKCFSD
101: AWQHHKVLHE RASSALNENG AEEEELFGRF GSGSSGILSS GSGSMSNLGQ SPGVNNGPVP LYPSGSDKSS GETWFEVGRS QTYTPTADDI GHVLRFECAA
201: VDTEKKVPGG PPTSIMTSRV IPAPTPTPRR LIQVNGDVLG HLDMDSQSSS FGTFTVLSYN ILADAYATSD AYSYCPTWAL SWTYRRQNLM REIIGYHADI
301: ICLQEVQLNH FEDFFAPEFD KHGYQALYKK RTTEVYAGVP HAIDGCATFF RRDRFSHVKK YEVEFNKAAQ SLTDAIIPPA QKRVALNRLI KDNIALIAVL
401: EAKFGNQGTE NPGKRQLLCV ANTHVNVHQD LKDVKLWEVQ TLLKGLEKIA NSADIPMLVC GDFNSIPGST PHGLLAIGKV DQLHPDLAID PLGILRPVSK
501: LTHQLPLVSA YSSFARMVGV GYDLEHQRRR MDSATNEPLF TNCTRDFTGT VDYIFYTADS LSVESLLELL DEENLRKDTA LPSPEWSSDH IALLAEFRCK
601: PRIRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.