Factsheet for GSMUA_Achr4P17200_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P09840_001
GSMUA_Achr4P27240_001
GSMUA_Achr5P03370_001
GSMUA_Achr9P01840_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	GSMUA_Achr2P09840_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr4P27240_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr5P03370_001	AT4G17950.1	21798944
AT3G58560.1	GSMUA_Achr9P01840_001	AT4G24690.1	21798944
AT3G58560.1	GSMUA_AchrUn_...	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P25420_001	Banana	cytosol	82.19	82.33
KRH71803	Soybean	cytosol	25.51	80.98
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	79.28	80.24
Os10t0412100-01	Rice	cytosol	76.2	73.55
PGSC0003DMT400029795	Potato	cytosol	76.2	73.55
VIT_08s0007g07020.t01	Wine grape	cytosol	75.86	73.47
Os03t0166800-01	Rice	cytosol	76.03	73.15
OQU91798	Sorghum	cytosol	75.51	72.77
Zm00001d032979_P003	Maize	cytosol	75.0	72.4
Solyc10g078950.1.1	Tomato	cytosol	69.35	72.19
CDX67751	Canola	cytosol	73.12	72.13
Bra003342.1-P	Field mustard	cytosol	72.95	71.96
KRG96349	Soybean	cytosol	73.8	71.83
CDX98303	Canola	cytosol	72.6	71.62
TraesCS1B01G153300.2	Wheat	cytosol	74.14	71.57
HORVU1Hr1G035390.1	Barley	cytosol	74.14	71.57
TraesCS1A01G137900.1	Wheat	cytosol	74.14	71.57
TraesCS1D01G134400.1	Wheat	cytosol	74.14	71.57
KRH38033	Soybean	cytosol	73.46	71.5
KRH68083	Soybean	cytosol	73.46	71.26
Zm00001d014187_P011	Maize	cytosol	73.29	70.98
AT3G58560.1	Thale cress	cytosol	72.95	70.76
KXG40109	Sorghum	mitochondrion	74.49	70.16
CDY00572	Canola	cytosol	71.92	70.0
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	70.72	69.53
Bra014566.1-P	Field mustard	cytosol	71.4	69.5
CDX67753	Canola	cytosol	71.23	69.33
Bra007403.1-P	Field mustard	cytosol	70.72	69.18
Bra003344.1-P	Field mustard	cytosol	67.81	69.11
CDY49233	Canola	cytosol	70.89	69.0
AT3G58580.1	Thale cress	cytosol	71.23	68.99
CDX88992	Canola	mitochondrion	65.24	68.77
CDX71943	Canola	cytosol	70.72	68.6
KRH71804	Soybean	cytosol	43.84	66.84
Zm00001d027811_P001	Maize	mitochondrion	73.46	66.61
CDX98305	Canola	plastid	70.55	64.68
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	76.2	60.96
GSMUA_Achr7P12580_001	Banana	mitochondrion	14.9	27.02
GSMUA_AchrUn_...	Banana	cytosol	14.55	26.81
GSMUA_Achr6P09650_001	Banana	nucleus	17.98	22.25
GSMUA_Achr1P14560_001	Banana	nucleus	19.18	14.53

Protein Annotations

EnsemblPlants:GSMUA_Achr4P17200_001	EnsemblPlants:GSMUA_Achr4T17200_001	EnsemblPlantsGene:GSMUA_Achr4G17200_001	Gene3D:3.60.10.10	InterPro:Endo/exonu/phosph_ase_sf	InterPro:Endo/exonuclease/phosphatase
InterPro:IPR036691	InterPro:Zfn-C6H2	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29	PFAM:PF03372	PFAM:PF15801
SEG:seg	SUPFAM:SSF56219	UniParc:UPI000296EADD	UniProt:M0SPN3	MapMan:16.8.2.1.2.1	:

Description

Carbon catabolite repressor protein 4 homolog 1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17200_001]

Coordinates

chr4:+:16459539..16465516

Molecular Weight (calculated)

65682.0 Da

IEP (calculated)

7.291

GRAVY (calculated)

-0.328

Length

584 amino acids

Sequence
(BLAST)

001: MLSVLRVHLP SEIPVVGCEI TPYVLLRRPD GSVSTDDVPE SAPFNGYCIR YKWYRDQSDQ KVSVCSVHPT EQATLQCIVC VKEKVPIAKS YHCSPKCFTD
101: AWQHHRSLHE QAKRTIKENG IEEEEAFGRF NNSGSGIPIY STTVAERNGE AWSEVGRSRT YTPTSDDINH VLKFECVVVY AETRIPVGNV HTILTSRVIP
201: APSPTPRRMI QVNGADVLGQ LDVDSRSASS RTFSVLSYNI LSDAYATSET YSYCPSWALS WSYRRQNLLR EIIGYHADIL CLQEVQNEHF EEFFAPELDK
301: HGYQALFKRR TSEVYSGNPN SVDGCATFFR RDRFSQVKKY EVEFNKAAQS LTDQGIAAGQ QKAALTRLIK DNIALIVVLE SKFGNHGADN PGKRRLLCVA
401: NTHVNVHHEY MDVKLWQVHT LLKGLEKIAI SADIPMLVCG DFNTVPGSAP HSLLARGKVD PLHPDLAVDP FGILRLTNKL SHQLPLVSAY SSFARMGGVA
501: PGVEQQRRRM DPATNEPLFT NCTRDFVGTV DYIFYTADSL MVESLLELLD EESLRKDTAI PSPQWSSDHI ALLAQFRCKH RTRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.