Factsheet for Zm00001d032979_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003300_P001
Zm00001d017072_P002
Zm00001d026036_P001
Zm00001d030053_P003
Zm00001d040272_P001
Zm00001d047042_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58560.1	Zm00001d026036_P001	AT4G17950.1	21798944
AT3G58560.1	Zm00001d030053_P003	AT4G17950.1	21798944
AT3G58560.1	Zm00001d047042_P004	AT4G17950.1	21798944
AT3G58560.1	Zm00001d003300_P001	AT4G24690.1	21798944
AT3G58560.1	Zm00001d017072_P002	AT4G24690.1	21798944
AT3G58560.1	Zm00001d040272_P001	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91798	Sorghum	cytosol	98.35	98.18
Zm00001d014187_P011	Maize	cytosol	94.88	95.19
Os10t0412100-01	Rice	cytosol	90.91	90.91
TraesCS1D01G134400.1	Wheat	cytosol	89.92	89.92
TraesCS1B01G153300.2	Wheat	cytosol	89.92	89.92
TraesCS1A01G137900.1	Wheat	cytosol	89.75	89.75
HORVU1Hr1G035390.1	Barley	cytosol	89.75	89.75
KRH71803	Soybean	cytosol	25.12	82.61
Zm00001d027811_P001	Maize	mitochondrion	83.14	78.11
VIT_08s0007g07020.t01	Wine grape	cytosol	77.02	77.28
PGSC0003DMT400029795	Potato	cytosol	76.03	76.03
GSMUA_Achr9P25420_001	Banana	cytosol	73.22	75.99
KRH38033	Soybean	cytosol	74.55	75.17
KRG96349	Soybean	cytosol	74.55	75.17
GSMUA_Achr4P17200_001	Banana	cytosol	72.4	75.0
KRH68083	Soybean	cytosol	74.38	74.75
Solyc10g078950.1.1	Tomato	cytosol	68.93	74.33
GSMUA_Achr9P11040_001	Banana	cytosol, peroxisome, vacuole	70.41	73.83
AT3G58560.1	Thale cress	cytosol	73.06	73.42
CDY00572	Canola	cytosol	71.57	72.17
CDX67753	Canola	cytosol	71.41	72.0
Bra014566.1-P	Field mustard	cytosol	71.41	72.0
CDX67751	Canola	cytosol	70.08	71.62
Bra003344.1-P	Field mustard	cytosol	67.77	71.55
AT3G58580.1	Thale cress	cytosol	71.24	71.48
Bra003342.1-P	Field mustard	cytosol	69.92	71.45
Solyc03g059010.2.1	Tomato	cytosol, nucleus, plastid	70.08	71.38
CDX88992	Canola	mitochondrion	65.29	71.3
CDX98303	Canola	cytosol	69.75	71.28
KRH71804	Soybean	cytosol	45.12	71.28
Bra007403.1-P	Field mustard	cytosol	70.08	71.02
CDX71943	Canola	cytosol	70.41	70.76
CDY49233	Canola	cytosol	69.92	70.5
CDX98305	Canola	plastid	70.58	67.03
GSMUA_Achr6P29710_001	Banana	endoplasmic reticulum, golgi	65.79	54.52
Zm00001d038091_P006	Maize	plastid	16.36	24.09
Zm00001d045673_P003	Maize	plastid	17.36	23.7
Zm00001d044447_P007	Maize	mitochondrion	14.05	14.86

Protein Annotations

EntrezGene:100279626	MapMan:16.8.2.1.2.1	Gene3D:3.60.10.10	UniProt:B7ZZ67	EMBL:BT054609	InterPro:Endo/exonu/phosph_ase_sf
InterPro:Endo/exonuclease/phosphatase	InterPro:IPR036691	ProteinID:ONM06495.1	ProteinID:ONM06496.1	ProteinID:ONM06497.1	ProteinID:ONM06501.1
ProteinID:ONM06503.1	ProteinID:ONM06504.1	PFAM:PF03372	PFAM:PF15801	PANTHER:PTHR12121	PANTHER:PTHR12121:SF29
SUPFAM:SSF56219	UniParc:UPI00019172CA	InterPro:Zfn-C6H2	EnsemblPlantsGene:Zm00001d032979	EnsemblPlants:Zm00001d032979_P003	EnsemblPlants:Zm00001d032979_T003
SEG:seg	:	:	:	:	:

Description

Carbon catabolite repressor protein 4 homolog 1

Coordinates

chr1:+:245560266..245573773

Molecular Weight (calculated)

67031.7 Da

IEP (calculated)

6.813

GRAVY (calculated)

-0.270

Length

605 amino acids

Sequence
(BLAST)

001: MLSVVRVHLP SEIPIVGCEI TPYVLLRRPD GAVSTNDVPE TAPADGQFMR YRWYRIQSDR KVPICSVHPM EQATIQCLGC LKSKIPVAKS YHCSAKCFSD
101: AWQHHKVLHE RASSALNENG AEEEELFGRF GSGGSGVLST AGSGSLSNFG QSPGVNNGPV PFYPSGTDKN SGETWFEVGR SRTYTPTADD IGHALKFECV
201: AVDSEKKSPI GPSTSIMTSR VIPAPTPTPR RLIQVNGDVL GHLDLDSQIS SLGTFTVLSY NILADAYATT DAYSYCPTWA LTWNYRRQNL LREIIGYHAD
301: IICLQEVQVN HFEDFFSPEL DKHGYQALYK KRTTEVYSGN PMAIDGCATF FRRDKFSHVK KYEVEFNKAA QSLTDAIIPA AQKRVALSRL IKDNIALIAV
401: LEAKFGNHGA ENPGKRQLLC VANTHINVHQ DLKDVKLWEV HTLLKGLEKI AVSADIPMLV CGDFNSTPGS SPHALLAMGK VDQHHPDLAI DPLGILRPPS
501: KLNHQLPLVS AYSAFARMVG VGYDLEHQRR TDPATNEPLF TNCTRDFTGT IDYIFYTADS LTVDSLLELL DEESLRKDTA LPSPEWSSDH IALLAEFRCK
601: PRIRR

Best Arabidopsis Sequence Match ( AT3G58560.1 )
(BLAST)

001: MLSVIRVHLP SEIPIVGCEL TPYVLLRRPD KTPSTDDVPE SAPLEGHFLK YRWFRVQSDK KVAICSVHPS ETATLQCLGC LKSKVPVAKS YHCSTKCFSD
101: AWQHHRVLHE RAASAATEGN DEEELPRLNS SGSGSGVLST SVSLTNGSSS VYPSAITQKT GAGGETLVEV GRSKTYTPMA DDICHVLKFE CVVVNAETKQ
201: NVGLSCTILT SRVIPAPSPS PRRLISISGT DVTGHLDSNG RPLSMGTFTV LSYNILSDTY ASSDIYSYCP TWALAWTYRR QNLLREIVKY RADIVCLQEV
301: QNDHFEEFFL PELDKHGYQG LFKRKTNEVF IGNTNTIDGC ATFFRRDRFS HVKKYEVEFN KAAQSLTEAI IPVSQKKNAL NRLVKDNVAL IVVLEAKFGS
401: QAADNPGKRQ LLCVANTHVN VPHELKDVKL WQVHTLLKGL EKIAASADIP MLVCGDFNTV PASAPHTLLA VGKVDPLHPD LMVDPLGILR PHSKLTHQLP
501: LVSAYSQFAK MGGNVITEQQ RRRLDPASSE PLFTNCTRDF IGTLDYIFYT ADTLTVESLL ELLDEESLRK DTALPSPEWS SDHIALLAEF RCMPRARRNN
601: IL

Arabidopsis Description

CCR4-1Carbon catabolite repressor protein 4 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W0Z9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.