Factsheet for Zm00001d030053_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001784_P002
Zm00001d012460_P001
Zm00001d018515_P002
Zm00001d026652_P001
Zm00001d042985_P001
Zm00001d051861_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	Zm00001d001784_P002	AT1G63470.1	21798944
AT4G17950.1	Zm00001d018515_P002	AT1G63470.1	21798944
AT4G17950.1	Zm00001d026652_P001	AT1G63470.1	21798944
AT4G17950.1	Zm00001d051861_P001	AT1G63470.1	21798944
AT4G17950.1	Zm00001d012460_P001	AT3G51780.1	21798944
AT4G17950.1	Zm00001d042985_P001	AT3G51780.1	21798944
AT4G17950.1	Zm00001d001784_P002	AT3G61310.1	21798944
AT4G17950.1	Zm00001d018515_P002	AT3G61310.1	21798944
AT4G17950.1	Zm00001d026652_P001	AT3G61310.1	21798944
AT4G17950.1	Zm00001d051861_P001	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38867	Sorghum	plastid	93.29	91.96
Os10t0572900-02	Rice	nucleus	55.16	91.63
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	88.01	85.55
TraesCS1B01G206100.2	Wheat	nucleus	77.22	71.4
TraesCS1A01G190900.1	Wheat	nucleus	77.7	71.37
TraesCS1D01G194900.2	Wheat	nucleus	77.22	70.93
HORVU1Hr1G049980.12	Barley	nucleus	78.18	70.26
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	31.65	69.47
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	49.88	59.09
GSMUA_Achr2P09840_001	Banana	nucleus	50.36	58.82
VIT_02s0012g00900.t01	Wine grape	nucleus	42.69	50.42
Zm00001d026036_P001	Maize	nucleus	45.8	47.51
PGSC0003DMT400045147	Potato	plastid	36.69	46.36
Solyc04g053090.1.1	Tomato	plastid	18.7	46.15
Zm00001d020951_P002	Maize	cytosol, nucleus, peroxisome, plastid	35.97	44.78
Zm00001d052901_P002	Maize	nucleus	39.33	44.44
KRH58200	Soybean	nucleus	37.41	43.09
Solyc04g053100.1.1	Tomato	plastid	17.03	42.77
Zm00001d031481_P001	Maize	nucleus, peroxisome, plasma membrane, plastid	40.77	41.26
CDY01503	Canola	cytosol	25.42	40.93
Zm00001d006034_P003	Maize	nucleus	41.73	40.47
KRH04337	Soybean	nucleus	34.53	40.45
Zm00001d037425_P001	Maize	nucleus	33.81	39.5
PGSC0003DMT400052826	Potato	nucleus	34.05	39.44
KRH28286	Soybean	plastid	31.89	39.23
Solyc08g077030.2.1	Tomato	nucleus	38.37	39.12
KRH77206	Soybean	nucleus	30.7	37.87
Zm00001d052495_P001	Maize	cytosol, nucleus, peroxisome	30.22	35.69
Zm00001d015090_P001	Maize	extracellular	22.54	35.47
AT5G46640.1	Thale cress	nucleus	32.37	34.97
Zm00001d004924_P001	Maize	cytosol	29.74	34.64
CDY03203	Canola	nucleus	29.5	34.36
Solyc08g006950.2.1	Tomato	nucleus	32.13	34.27
CDX78814	Canola	nucleus	33.33	34.15
Zm00001d018515_P002	Maize	nucleus	31.65	34.02
CDY35172	Canola	nucleus	28.3	33.43
Bra017536.1-P	Field mustard	nucleus	28.3	33.43
Zm00001d049661_P001	Maize	cytosol, peroxisome, plasma membrane	31.18	33.25
Bra021027.1-P	Field mustard	nucleus	32.61	33.17
CDY44500	Canola	nucleus	33.09	32.86
Zm00001d051861_P001	Maize	endoplasmic reticulum, nucleus, plastid	31.41	32.75
CDY41027	Canola	cytosol	20.86	32.71
CDY68252	Canola	nucleus	23.02	32.32
CDY08882	Canola	nucleus	33.33	31.95
AT4G17950.1	Thale cress	nucleus	33.57	31.89
CDY41028	Canola	nucleus, plastid	18.94	31.85
CDY01506	Canola	nucleus	22.78	31.56
CDY26693	Canola	plastid	20.38	31.48
CDX76549	Canola	nucleus	33.09	31.36
Bra025717.1-P	Field mustard	nucleus	22.78	31.35
CDY26692	Canola	nucleus	22.78	31.35
CDY26694	Canola	cytosol, plastid	19.42	30.92
Bra025716.1-P	Field mustard	nucleus	19.9	30.86
Bra025718.1-P	Field mustard	nucleus, plastid	22.3	30.59
CDY26691	Canola	cytosol, plastid	22.54	30.23
Bra013270.1-P	Field mustard	nucleus	30.7	30.05
Zm00001d026652_P001	Maize	plastid	27.34	28.72
Zm00001d001784_P002	Maize	nucleus	27.34	26.21
Zm00001d020950_P001	Maize	cytosol	1.2	4.27

Protein Annotations

EntrezGene:100282073	Gene3D:3.30.1330.80	MapMan:35.1	UniProt:B4FWG7	EMBL:BT041455	EMBL:BT067230
EMBL:BT067247	EMBL:BT068742	EMBL:EU959419	InterPro:IPR005175	ProteinID:ONM00085.1	ProteinID:ONM00089.1
ProteinID:ONM00090.1	ProteinID:ONM00091.1	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31500
PANTHER:PTHR31500:SF25	SUPFAM:SSF117856	UniParc:UPI00017B7AF8	EnsemblPlantsGene:Zm00001d030053	EnsemblPlants:Zm00001d030053_P003	EnsemblPlants:Zm00001d030053_T003
SEG:seg	:	:	:	:	:

Description

AT-hook motif nuclear-localized protein 13

Coordinates

chr1:+:102359465..102363384

Molecular Weight (calculated)

42883.8 Da

IEP (calculated)

10.145

GRAVY (calculated)

-0.407

Length

417 amino acids

Sequence
(BLAST)

001: METKDVSPLA AATTTTAAPV PAPTSQPPPP APSSMAPPQH QHQHHPPPPF AQQAAPVPSP AASMPGGMRL SFDQMSGKAP GEQHHHSAPM LYTVPPPQSA
101: AGAGAPGANV LGMGELMRKK RGRPRKYAPD GSMALALAPI SSASAGGAAA PGQQQHGGGF SISSPPSDPN AKRRGRPPGS GKKKQFEALG SWGIAFTPHI
201: LTVKAGEDVA SKIMTFSQQG PRTVCILSAN GAISNVTLRQ PATSGGLVTY EGRFEIISLS GSFLLAEDGD TRSRTGGLSV ALAGSDGRVL GGCVAGMLMA
301: ATPVQVVVAS FIAEGKKSKP AEARKVEPMA APPPQMATFV PPPLATSPPS EGTSSASSDD SGSPIHHSAM PFSNSSQHQH PHQHQHQHMP PAYASGGWSL
401: SVHQQNRHDS DMKMMSN

Best Arabidopsis Sequence Match ( AT4G12080.1 )
(BLAST)

001: MVLNMESTGE AVRSTTGNDG GITVVRSDAP SDFHVAQRSE SSNQSPTSVT PPPPQPSSHH TAPPPLQIST VTTTTTTAAM EGISGGLMKK KRGRPRKYGP
101: DGTVVALSPK PISSAPAPSH LPPPSSHVID FSASEKRSKV KPTNSFNRTK YHHQVENLGE WAPCSVGGNF TPHIITVNTG EDVTMKIISF SQQGPRSICV
201: LSANGVISSV TLRQPDSSGG TLTYEGRFEI LSLSGSFMPN DSGGTRSRTG GMSVSLASPD GRVVGGGLAG LLVAASPVQV VVGSFLAGTD HQDQKPKKNK
301: HDFMLSSPTA AIPISSAADH RTIHSVSSLP VNNNTWQTSL ASDPRNKHTD INVNVT

Arabidopsis Description

AHL1ATAHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178V7H8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.