Factsheet for Bra013270.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003446.1-P
Bra006876.1-P
Bra007595.1-P
Bra012837.1-P
Bra014444.1-P
Bra027642.1-P
Bra027801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17950.1	Bra027642.1-P	AT1G63470.1	21798944
AT4G17950.1	Bra027801.1-P	AT1G63470.1	21798944
AT4G17950.1	Bra006876.1-P	AT3G51780.1	21798944
AT4G17950.1	Bra012837.1-P	AT3G51780.1	21798944
AT4G17950.1	Bra003446.1-P	AT3G61310.1	21798944
AT4G17950.1	Bra007595.1-P	AT3G61310.1	21798944
AT4G17950.1	Bra014444.1-P	AT3G61310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78814	Canola	nucleus	80.05	83.78
CDY44500	Canola	nucleus	77.7	78.81
Bra021027.1-P	Field mustard	nucleus	63.85	66.34
AT4G17950.1	Thale cress	nucleus	65.26	63.33
Bra025716.1-P	Field mustard	nucleus	34.27	54.28
Bra017536.1-P	Field mustard	nucleus	43.66	52.69
Bra025717.1-P	Field mustard	nucleus	35.21	49.51
Bra025718.1-P	Field mustard	nucleus, plastid	33.1	46.38
Bra022946.1-P	Field mustard	nucleus	25.82	41.98
VIT_02s0012g00900.t01	Wine grape	nucleus	34.04	41.08
Os10t0572900-02	Rice	nucleus	23.94	40.64
Solyc04g053090.1.1	Tomato	plastid	15.96	40.24
HORVU2Hr1G105800.13	Barley	cytosol, vacuole	27.46	38.11
Solyc04g053100.1.1	Tomato	plastid	14.79	37.95
GSMUA_Achr5P03370_001	Banana	mitochondrion, plastid	16.9	37.89
GSMUA_Achr4P27240_001	Banana	cytosol, extracellular, nucleus, plastid	30.75	37.22
HORVU7Hr1G065300.2	Barley	mitochondrion, plastid	16.43	37.04
KRH58200	Soybean	nucleus	30.99	36.46
OQU82226	Sorghum	plastid	29.58	36.31
KRH28286	Soybean	plastid	28.87	36.28
Os04t0589900-01	Rice	nucleus	31.69	35.62
GSMUA_Achr2P09840_001	Banana	nucleus	29.58	35.29
KRH77206	Soybean	nucleus	27.7	34.91
Bra021865.1-P	Field mustard	nucleus	28.4	34.57
KRH04337	Soybean	nucleus	28.87	34.55
PGSC0003DMT400052826	Potato	nucleus	28.87	34.17
Zm00001d026036_P001	Maize	nucleus	30.52	32.34
Bra013646.1-P	Field mustard	nucleus	23.0	32.13
Bra025511.1-P	Field mustard	nucleus	20.89	32.13
Bra033121.1-P	Field mustard	nucleus	23.24	31.94
Bra007595.1-P	Field mustard	nucleus	25.35	31.67
Bra037321.1-P	Field mustard	nucleus	23.47	31.65
Bra014444.1-P	Field mustard	nucleus	24.65	31.53
TraesCS2B01G470900.1	Wheat	cytosol, nucleus, peroxisome, plastid	30.28	31.31
TraesCS2A01G449500.1	Wheat	plastid	30.05	31.22
Bra039309.1-P	Field mustard	nucleus	24.88	31.09
TraesCS2D01G448900.1	Wheat	cytosol, nucleus, peroxisome, plastid	30.05	31.07
Zm00001d030053_P003	Maize	plastid	30.05	30.7
KXG38867	Sorghum	plastid	30.05	30.26
Zm00001d047042_P004	Maize	cytosol, nucleus, plasma membrane	30.28	30.07
Bra019359.1-P	Field mustard	nucleus	23.0	29.79
Solyc08g006950.2.1	Tomato	nucleus	26.76	29.16
Bra027642.1-P	Field mustard	nucleus	26.06	29.13
Bra003446.1-P	Field mustard	nucleus	22.77	28.61
Bra027801.1-P	Field mustard	nucleus	24.88	28.27
TraesCS1B01G206100.2	Wheat	nucleus	29.34	27.72
TraesCS1A01G190900.1	Wheat	nucleus	29.34	27.53
TraesCS1D01G194900.2	Wheat	nucleus	29.34	27.53
HORVU1Hr1G049980.12	Barley	nucleus	29.34	26.94
Bra019174.1-P	Field mustard	nucleus	23.47	25.25
Bra029164.1-P	Field mustard	nucleus	24.65	24.76
Bra035899.1-P	Field mustard	nucleus	22.77	24.74
Bra013886.1-P	Field mustard	nucleus	22.07	24.67
Bra010070.1-P	Field mustard	nucleus	23.24	24.57
Bra020612.1-P	Field mustard	nucleus	20.19	24.43
Bra022555.1-P	Field mustard	nucleus	23.94	24.34
Bra028265.1-P	Field mustard	nucleus	24.41	24.24
Bra009999.1-P	Field mustard	nucleus	20.66	23.66
Bra040133.1-P	Field mustard	nucleus	20.89	23.24
Bra029271.1-P	Field mustard	cytosol, nucleus, peroxisome	21.6	22.94

Protein Annotations

EnsemblPlants:Bra013270.1	EnsemblPlants:Bra013270.1-P	EnsemblPlantsGene:Bra013270	Gene3D:3.30.1330.80	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:AT_hook_DNA-bd_motif	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31500
PANTHER:PTHR31500:SF44	PFAM:PF03479	PFscan:PS51742	SEG:seg	SMART:SM00384	SUPFAM:SSF117856
UniParc:UPI0002545EA8	UniProt:M4D9W0	MapMan:35.1	:	:	:

Description

AT4G17950 (E=2e-094) | DNA-binding family protein

Coordinates

chrA01:-:4636634..4638228

Molecular Weight (calculated)

45206.0 Da

IEP (calculated)

10.332

GRAVY (calculated)

-0.402

Length

426 amino acids

Sequence
(BLAST)

001: MDSRELHHQH QQQLQQQQQL QPPPGMLMGS FNRNPNASLM GPTSTSQAMM HHHHRSSSLP FGSLSPHHLQ MDQKTLESLG FEGSPSTHQQ SMRFGIEQQQ
101: QVKKKRGRPR KYTPDANNIA LALAPTSPLP SASNSYGGGN DGAGDSGGCG GANSTDPPAK RNRGRPPGSG KKQLDALGGT GGVGFTPHVI EVKTGEDIAM
201: KVVAFTHQGP RAICILSATG AVSSVMFRQS SNPNGVVKYE GPYEIISMSG SFLNTESNGT VTKTGSLSVS LARPDGQVVG GCVAGMLVAG SQVQVVVGSF
301: VPEVKKPKQS AGRVQNTPEP ASAPANMLSF GGGGGQEALG LRDSSNIRAS HQRKTKVTLR CTVVATTITT TIIMDYLETL RRNHFTKCLC SRCTILTSGL
401: ATILNKQSWF IAMLRLHISP SELSTS

Best Arabidopsis Sequence Match ( AT4G17950.1 )
(BLAST)

001: MDSREIHHQQ QQQQQQQQQQ QQQQQHLQQQ QQPPPGMLMS HHNSYNRNPN AAAAVLMGHN TSTSQAMHQR LPFGGSMSPH QPQQHQYHHP QPQQQIDQKT
101: LESLGFDGSP SSVAATQQHS MRFGIDHQQV KKKRGRPRKY AADGGGGGGG GSNIALGLAP TSPLPSASNS YGGGNEGGGG GDSAGANANS SDPPAKRNRG
201: RPPGSGKKQL DALGGTGGVG FTPHVIEVKT GEDIATKILA FTNQGPRAIC ILSATGAVTN VMLRQANNSN PTGTVKYEGR FEIISLSGSF LNSESNGTVT
301: KTGNLSVSLA GHEGRIVGGC VDGMLVAGSQ VQVIVGSFVP DGRKQKQSAG RAQNTPEPAS APANMLSFGG VGGPGSPRSQ GQQHSSESSE ENESNSPLHR
401: RSNNNNSNNH GIFGNSTPQP LHQIPMQMYQ NLWPGNSPQ

Arabidopsis Description

AHL13AT-hook motif nuclear-localized protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q940I0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.